Arsenicicoccus bolidensis

General Information

Arsenicicoccus bolidensis is a fascinating microorganism primarily due to its unique ability to thrive in environments with high concentrations of arsenic. This bacterium was first isolated from a biofilm in a gold mine in Boliden, Sweden, which is notable for its extreme conditions, including high levels of heavy metals. One of the most intriguing aspects of A. bolidensis is its potential for bioremediation. The organism's ability to tolerate and possibly transform arsenic compounds makes it a valuable candidate for cleaning up arsenic-contaminated environments. Additionally, A. bolidensis belongs to the family Dermabacteraceae, which includes other species known for their resilience in harsh conditions. This resilience is not only of ecological interest but also of potential industrial application, where microorganisms are often employed in processes that require robust and adaptable species. The metabolic pathways of A. bolidensis are of particular interest to researchers because understanding how this bacterium processes arsenic could lead to the development of new biotechnological tools. For instance, enzymes involved in arsenic metabolism could be harnessed for use in biosensors or in the detoxification of industrial waste. In summary, Arsenicicoccus bolidensis stands out due to its arsenic resistance, potential for bioremediation, and the broader implications of its metabolic capabilities. These characteristics make it a valuable subject of study in both environmental microbiology and industrial biotechnology.

Arsenicicoccus bolidensis is a fascinating microorganism that belongs to the family of Arsenicicoccaceae. This bacterium is particularly notable for its unique ability to utilize arsenic as a respiratory electron acceptor, which allows it to thrive in environments contaminated with this toxic element. This characteristic not only highlights its potential role in bioremediation but also makes it an interesting subject for studying microbial arsenic metabolism. One of the most intriguing aspects of Arsenicicoccus bolidensis is its adaptation to extreme environments, such as those found in arsenic-rich sediments. This adaptability provides insights into how life can persist in harsh conditions, which is valuable for understanding extremophiles and their potential applications in biotechnology. Furthermore, research on Arsenicicoccus bolidensis contributes to our understanding of the biogeochemical cycling of arsenic in ecosystems. By studying its metabolic pathways, scientists can gain a deeper understanding of how arsenic is transformed in nature, which is crucial for environmental monitoring and management. In summary, Arsenicicoccus bolidensis stands out due to its unique metabolic capabilities, its role in biogeochemical cycles, and its potential applications in bioremediation efforts, making it a significant organism for both ecological and biotechnological research.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Micrococcales

Family: Intrasporangiaceae

Genus: Arsenicicoccus

Species: Arsenicicoccus bolidensis

NCBI ID

229480

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/032/113/675/GCA_032113675.1_ASM3211367v1

File for sequence-based predictions:
GCA_032113675.1_ASM3211367v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Arsenicicoccus bolidensis is a Gram-negative, anaerobic bacterium that has garnered attention due to its unique metabolic capabilities, particularly its ability to reduce arsenic. While it is primarily known for its role in biogeochemical cycles, its clinical implications are still being explored. One of the notable aspects of Arsenicicoccus bolidensis is its potential association with infections in humans, particularly in environments where arsenic is prevalent. Clinical relevance may arise from its ability to survive in extreme conditions, which could pose a risk in contaminated water sources. Furthermore, its metabolic pathways may influence immune responses in the human body, although specific mechanisms of immune evasion have not been extensively documented. In terms of pathogenicity, there is limited evidence linking Arsenicicoccus bolidensis directly to human disease; however, its presence in the microbiome of individuals exposed to arsenic could suggest a role in disease associations related to arsenic toxicity. The organism's potential for antimicrobial resistance is also a concern, as its survival in harsh environments may confer resistance traits that could complicate treatment options in the event of an infection. Currently, there are no established medical applications such as probiotics, vaccines, or therapeutics directly associated with Arsenicicoccus bolidensis. However, understanding its role in arsenic metabolism may lead to future applications in bioremediation or therapeutic strategies for arsenic poisoning. Overall, while Arsenicicoccus bolidensis is not yet fully characterized in clinical contexts, its unique properties warrant further investigation into its potential implications for human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Arsenicicoccus bolidensis is a unique microorganism primarily associated with anoxic environments rich in arsenic. This bacterium thrives in sediments and soils that are contaminated with arsenic, often found in areas with high levels of organic matter decomposition. Its ecological niche is particularly significant in wetlands and marine sediments, where it plays a crucial role in the biogeochemical cycling of arsenic and sulfur. In these environments, Arsenicicoccus bolidensis engages in anaerobic respiration, utilizing arsenate as a terminal electron acceptor, which allows it to survive in conditions where oxygen is scarce. This metabolic process not only aids in the detoxification of arsenic but also contributes to the overall health of the ecosystem by facilitating nutrient cycling. The interactions of Arsenicicoccus bolidensis with its surroundings are notable; it can form symbiotic relationships with other microorganisms, enhancing the degradation of organic materials and the transformation of arsenic compounds. Its presence in contaminated sites can indicate the potential for bioremediation strategies, showcasing its adaptability and ecological importance in polluted environments. Overall, Arsenicicoccus bolidensis exemplifies the resilience of life in extreme conditions and highlights the intricate connections within microbial communities that drive ecosystem functions.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Arsenicicoccus bolidensis has shown significant potential in various industrial applications, particularly in the fields of biotechnology and waste management. This organism is known for its ability to thrive in arsenic-rich environments, making it a candidate for bioremediation processes aimed at detoxifying contaminated sites. By utilizing its natural metabolic pathways, Arsenicicoccus bolidensis can convert toxic arsenic compounds into less harmful forms, thus playing a crucial role in environmental cleanup efforts. In the realm of biofuel production, Arsenicicoccus bolidensis may contribute to the development of sustainable energy sources. Its metabolic capabilities can be harnessed in fermentation processes to convert organic waste into biofuels, potentially enhancing the efficiency of biofuel production systems. Furthermore, the enzymatic activities of Arsenicicoccus bolidensis can be explored for pharmaceutical development. The organism's unique enzymes may have applications in the synthesis of bioactive compounds, which could lead to the discovery of new drugs or therapeutic agents. Overall, Arsenicicoccus bolidensis represents a promising candidate for various industrial applications, particularly in waste treatment, bioremediation, and biofuel production, showcasing its versatility and importance in addressing environmental and energy challenges.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	openchat/openchat-7b	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro	google/gemini-pro	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain negative ✗	gram stain negative ✗	gram stain negative ✗	gram stain variable ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	aerotolerant ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A
Extreme environment tolerance	N/A	false	false	true	true	true	false	true	false	true	false	false	false	false	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Biofilm formation	N/A	false	true	true	true	true	true	true	false	true	true	true	false	false	false	false	true	true	false	false	true	true	false	false	true	true	true	true
Animal pathogenicity	TRUE	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	false	false	true	false	true	true	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false	true	true	false	false
Host association	N/A	false	false	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	coccus	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	bacillus ✗	coccus ✓	bacillus ✗	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓	coccus ✓

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