Pseudomonas bubulae

General Information

Pseudomonas bubulae is a fascinating microorganism that belongs to the genus Pseudomonas, which is known for its metabolic diversity and adaptability to various environments. One of the key characteristics of Pseudomonas bubulae is its ability to thrive in diverse ecological niches, making it a subject of interest for environmental microbiologists. This adaptability is often linked to its versatile metabolic pathways, which allow it to utilize a wide range of organic compounds as energy sources. Another noteworthy feature of Pseudomonas bubulae is its potential for bioremediation. Members of the Pseudomonas genus are well-documented for their roles in breaking down pollutants, and Pseudomonas bubulae is no exception. Its ability to degrade complex organic pollutants makes it a valuable candidate for cleaning up contaminated environments, such as oil spills and industrial waste sites. From a biotechnological perspective, Pseudomonas bubulae holds promise due to its production of secondary metabolites. These compounds can have antimicrobial properties, making this bacterium a potential source for new antibiotics. Additionally, its enzymes are of interest for industrial applications, including the synthesis of bioplastics and biofuels. In summary, Pseudomonas bubulae is a microorganism of significant interest due to its metabolic versatility, bioremediation potential, and biotechnological applications. Its ability to adapt to various environments and degrade pollutants, along with its production of valuable secondary metabolites, underscores its importance in both environmental and industrial contexts.

Pseudomonas bubulae is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This species is primarily associated with the bovine environment, particularly in the context of dairy farming, where it has been isolated from the milk of cows. Its ability to thrive in such a specific habitat highlights its adaptation to the bovine microbiome, making it an interesting subject for studies on host-microbe interactions. One of the most notable characteristics of Pseudomonas bubulae is its metabolic versatility. This organism can utilize a wide range of organic compounds, which positions it as a potential candidate for bioremediation efforts. The capacity to degrade various pollutants could be harnessed in environmental cleanup processes, particularly in agricultural settings where chemical runoff is a concern. Additionally, Pseudomonas bubulae has been studied for its potential role in promoting plant growth. Research indicates that certain strains may produce plant growth-promoting substances, which could enhance crop yields and contribute to sustainable agricultural practices. This dual role in both animal health and agricultural productivity makes Pseudomonas bubulae a valuable organism for further research. Furthermore, the genetic and biochemical pathways of Pseudomonas bubulae are of interest to microbiologists. Understanding its genetic makeup could provide insights into the mechanisms of adaptation and survival in specific environments, as well as its interactions with other microbial communities. Overall, Pseudomonas bubulae represents a unique intersection of animal health, environmental science, and agricultural innovation, making it a promising subject for future studies.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas bubulae

NCBI ID

2316085

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/037/023/725/GCF_037023725.1_ASM3702372v1

File for sequence-based predictions:
GCF_037023725.1_ASM3702372v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas bubulae is a lesser-known member of the Pseudomonas genus, which is primarily associated with environmental habitats. However, its clinical implications are becoming increasingly relevant. This bacterium has been identified in cases of infections in immunocompromised patients, particularly those with underlying health conditions. Pathogenicity is attributed to its ability to form biofilms and produce a variety of virulence factors, which can lead to chronic infections and complicate treatment options. One of the significant concerns regarding Pseudomonas bubulae is its potential for antimicrobial resistance. Like other Pseudomonas species, it may exhibit resistance to multiple classes of antibiotics, making infections difficult to treat. This resistance is often due to the presence of efflux pumps and the ability to acquire resistance genes from other bacteria, which poses a challenge in clinical settings. In terms of immune evasion, Pseudomonas bubulae can manipulate host immune responses, allowing it to persist in the host despite the presence of an active immune system. This characteristic is particularly concerning in patients with weakened immune defenses, where the bacterium can lead to severe complications. While research on Pseudomonas bubulae is still emerging, its role in nosocomial infections and its association with chronic conditions underscore the need for continued surveillance and study. Understanding its pathogenic mechanisms and resistance profiles is crucial for developing effective treatment strategies and improving patient outcomes.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas bubulae is a bacterium commonly associated with various habitat types that reflect its ecological versatility. This microorganism is primarily found in soil and water environments, where it plays a significant role in nutrient cycling and organic matter decomposition. Its ability to thrive in diverse conditions makes it an important player in both terrestrial and aquatic ecosystems. Soil Biomes: In terrestrial ecosystems, Pseudomonas bubulae contributes to soil health by participating in the breakdown of organic materials, thus enhancing soil fertility. It is often found in agricultural soils, where it can promote plant growth through its interactions with plant roots, potentially acting as a plant growth-promoting rhizobacterium (PGPR). This interaction can lead to improved nutrient uptake and increased resistance to pathogens, showcasing its role in symbiotic relationships. Aquatic Environments: In freshwater and marine ecosystems, Pseudomonas bubulae is known for its ability to degrade pollutants, including hydrocarbons and other organic compounds. This bioremediation capability is crucial for maintaining the health of aquatic environments, as it helps to mitigate the effects of pollution. The bacterium can also form biofilms on surfaces, which can influence the dynamics of microbial communities in these habitats. Overall, Pseudomonas bubulae exemplifies the adaptability of microorganisms to various biomes, highlighting its importance in ecological balance and environmental health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas bubulae has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Pseudomonas bubulae is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are valuable in the production of bio-based chemicals and can enhance the efficiency of chemical reactions in industrial settings. In the realm of waste management, Pseudomonas bubulae has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic pollutants. This makes it a candidate for use in bioremediation strategies aimed at cleaning up contaminated environments, such as oil spills or heavy metal-laden sites. Furthermore, the organism has potential applications in biofuel production. Its metabolic pathways can be exploited in fermentation processes to convert biomass into biofuels, contributing to sustainable energy solutions. The ability of Pseudomonas bubulae to utilize various substrates enhances its utility in this field. In pharmaceutical development, the unique metabolic properties of Pseudomonas bubulae can be leveraged for the production of bioactive compounds, which may lead to the discovery of new drugs or therapeutic agents. The organism's enzymatic activity can also be explored for the synthesis of complex pharmaceutical intermediates. Overall, Pseudomonas bubulae represents a versatile microorganism with promising applications across multiple industries, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 11

LLM predicted phenotypes: 2

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	google/gemma-7b-it	openchat/openchat-7b	openchat/openchat-7b	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	TRUE	false ✗	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	false	true	false	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Host association	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	beta ✗	beta ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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