Pseudomonas alkylphenolica

General Information

Pseudomonas alkylphenolica is a fascinating microorganism primarily due to its remarkable ability to degrade alkylphenols, which are environmental pollutants commonly found in industrial waste. This capability makes it a valuable candidate for bioremediation efforts aimed at cleaning up contaminated environments. One of the most intriguing aspects of Pseudomonas alkylphenolica is its metabolic versatility. It can utilize a wide range of organic compounds as carbon and energy sources, which underscores its adaptability to various ecological niches. This metabolic flexibility is facilitated by a diverse array of enzymes that can break down complex organic molecules, making it a subject of interest for researchers studying microbial degradation pathways. Additionally, Pseudomonas alkylphenolica has been noted for its potential in biotechnological applications beyond environmental cleanup. For instance, its enzymatic machinery could be harnessed for the synthesis of valuable biochemicals or the development of bio-based industrial processes. The organism's genetic and biochemical pathways are therefore of significant interest for synthetic biology and metabolic engineering. In summary, Pseudomonas alkylphenolica stands out due to its environmental significance in degrading harmful pollutants and its biotechnological potential. Its ability to thrive in diverse conditions and break down complex compounds makes it a key player in both natural and engineered ecosystems.

Pseudomonas alkylphenolica is a fascinating bacterium known for its unique ability to degrade alkylphenols, which are environmental pollutants commonly found in industrial waste. This organism is particularly interesting due to its potential applications in bioremediation, where it can be utilized to clean up contaminated sites by breaking down harmful compounds into less toxic forms. The metabolic pathways employed by Pseudomonas alkylphenolica for the degradation of these compounds are of significant research interest, as they provide insights into microbial adaptation to toxic environments and the evolution of biodegradation capabilities. Another remarkable characteristic of Pseudomonas alkylphenolica is its ability to thrive in diverse environments, including soil and water, which makes it a versatile candidate for environmental applications. Its resilience and metabolic versatility highlight the potential for harnessing this bacterium in biotechnological processes, such as the development of biofilters or bioreactors designed to treat wastewater containing alkylphenolic compounds. Furthermore, studies on Pseudomonas alkylphenolica contribute to our understanding of microbial ecology and the interactions between microorganisms and pollutants. The insights gained from this organism can inform strategies for enhancing biodegradation processes in natural and engineered systems, making it a valuable subject for ongoing research in environmental microbiology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas alkylphenolica

NCBI ID

237609

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/755/645/GCF_009755645.1_ASM975564v1

File for sequence-based predictions:
GCF_009755645.1_ASM975564v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas alkylphenolica is a Gram-negative bacterium that has garnered attention due to its potential clinical implications. It is primarily known for its role in the degradation of environmental pollutants, particularly alkylphenols, which are common in industrial waste. However, its relevance in human health is not as extensively documented as other members of the Pseudomonas genus, such as Pseudomonas aeruginosa. In terms of pathogenicity, Pseudomonas alkylphenolica has been isolated from various environments, including soil and water, but its direct association with human infections remains limited. Nonetheless, its close relatives, particularly Pseudomonas aeruginosa, are well-known opportunistic pathogens that can cause severe infections in immunocompromised individuals. This raises concerns about the potential for Pseudomonas alkylphenolica to exhibit similar pathogenic traits under certain conditions. One area of concern is the potential for antimicrobial resistance mechanisms, as many Pseudomonas species are known for their ability to develop resistance to multiple antibiotics. This resistance can complicate treatment options for infections caused by related species, and there is a possibility that Pseudomonas alkylphenolica may share similar resistance traits, particularly in environments where antibiotic exposure is prevalent. Furthermore, the organism's ability to thrive in diverse environments suggests it may possess immune evasion strategies that could be relevant in clinical settings, especially if it were to adapt to human hosts. While there are no well-documented outbreaks or infections directly linked to Pseudomonas alkylphenolica, its environmental persistence and potential for pathogenicity warrant further investigation. In summary, while Pseudomonas alkylphenolica is not currently recognized as a significant human pathogen, its environmental resilience, potential for antimicrobial resistance, and the pathogenic nature of its relatives underscore the importance of monitoring this organism in clinical and environmental contexts.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas alkylphenolica is a versatile bacterium commonly found in various aquatic environments and soil ecosystems. This microorganism thrives particularly in environments that are rich in organic compounds, such as those influenced by human activity, including wastewater treatment plants and industrial effluents. Its ability to degrade complex organic pollutants, especially alkylphenols, makes it a crucial player in bioremediation processes, helping to mitigate environmental contamination and restore ecological balance. In soil habitats, Pseudomonas alkylphenolica interacts with other microbial communities, often engaging in nutrient cycling and organic matter decomposition. This bacterium can form symbiotic relationships with plants, enhancing their growth by improving nutrient availability and promoting soil health. Its metabolic versatility allows it to adapt to varying environmental conditions, making it resilient in both aerobic and anaerobic settings. Overall, Pseudomonas alkylphenolica plays a significant role in maintaining the health of its ecosystems, contributing to biodegradation and bioremediation, and supporting the intricate web of life within its habitats.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas alkylphenolica has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to degrade complex organic compounds, particularly in the context of biodegradation. This capability makes it a valuable asset in waste management, as it can effectively break down pollutants such as alkylphenols, which are common in industrial effluents. In the realm of biofuel production, Pseudomonas alkylphenolica can be involved in the fermentation processes that convert organic materials into biofuels, enhancing the efficiency of biofuel generation from waste products. Its metabolic pathways allow for the conversion of various substrates into energy-rich compounds, which can be harnessed for sustainable energy solutions. Furthermore, this microorganism has potential applications in pharmaceutical development, particularly in the production of enzymes that can be used in drug synthesis or as biocatalysts in various chemical reactions. The enzymatic activity of Pseudomonas alkylphenolica can facilitate the development of new therapeutic agents, showcasing its versatility in the pharmaceutical industry. Overall, Pseudomonas alkylphenolica stands out as a promising organism for environmental biotechnology, contributing to both ecological sustainability and industrial efficiency through its diverse metabolic capabilities.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	google/gemma-7b-it	google/gemma-7b-it	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	false ✗	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	true	true	true	true	false	false	false	false	false	true	true	true	true	false	false	false	false	true	true	true	true	true	true	false	false	false	false
Host association	N/A	false	true	true	true	true	false	true	false	false	false	false	false	false	false	false	false	false	false	true	true	true	true	true	true	false	false	false	false
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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