Planomicrobium okeanokoites

General Information

Planomicrobium okeanokoites is a fascinating microorganism belonging to the genus Planomicrobium. This bacterium is particularly interesting due to its adaptability to various environmental conditions. It was originally isolated from marine environments, which suggests that it has evolved mechanisms to thrive in saline conditions. This makes it a valuable subject for studying halotolerance and the biochemical pathways that enable survival in high-salt environments. One of the unique aspects of P. okeanokoites is its potential for biotechnological applications. The enzymes produced by this bacterium may have industrial relevance, particularly in processes that require stability and activity in saline conditions. Additionally, its ability to degrade certain organic compounds could be harnessed for bioremediation efforts, especially in marine pollution scenarios. From a research perspective, Planomicrobium okeanokoites offers insights into the evolutionary adaptations of marine bacteria. Studying its genome and metabolic pathways can reveal how microorganisms adapt to extreme environments, which has broader implications for understanding microbial life on Earth and potentially other planets. The bacterium's resilience and versatility make it a model organism for exploring the limits of microbial life and the potential for life in extraterrestrial environments.

Planomicrobium okeanokoites is a fascinating marine bacterium that has garnered attention due to its unique ecological niche and metabolic capabilities. Isolated from deep-sea environments, this organism thrives in high-pressure conditions, showcasing its adaptability to extreme habitats. One of the most interesting aspects of P. okeanokoites is its ability to utilize a variety of organic compounds, which positions it as a potential player in biogeochemical cycles in marine ecosystems. This metabolic versatility not only highlights its ecological importance but also suggests potential applications in bioremediation and biotechnology. The genome of P. okeanokoites has been sequenced, revealing genes associated with the degradation of complex organic materials, which could be invaluable for understanding nutrient cycling in oceanic environments. Furthermore, its unique lipid composition, which includes unusual fatty acids, makes it a subject of interest for researchers studying membrane biology and the evolution of extremophiles. The study of Planomicrobium okeanokoites could provide insights into microbial life in extreme conditions and contribute to the development of novel biotechnological applications.

Taxonomy

Superkingdom: Bacteria

Phylum: Bacillota

Class: Bacilli

Order: Bacillales

Family: Planococcaceae

Genus: Planomicrobium

Species: Planomicrobium okeanokoites

NCBI ID

244

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/900/176/575/GCA_900176575.1_PRJEB20355

File for sequence-based predictions:
GCA_900176575.1_PRJEB20355_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Planomicrobium okeanokoites is a member of the Planctomycetes phylum and has been studied for its potential clinical implications, particularly in the context of human health and disease associations. While it is primarily known for its role in marine environments, its presence in human-associated microbiomes raises questions about its pathogenicity and interactions with the human body. One of the notable aspects of Planomicrobium okeanokoites is its potential involvement in biofilm formation, which can contribute to chronic infections and complicate treatment strategies. The organism's ability to adhere to surfaces and form protective layers may enhance its survival in hostile environments, including those found in medical devices or chronic wounds. In terms of antimicrobial resistance, there is limited data available, but the organism's environmental origins suggest it may possess mechanisms to withstand various antimicrobial agents. This raises concerns about its potential role in nosocomial infections and the challenges it may pose in clinical settings. Furthermore, the study of Planomicrobium okeanokoites may provide insights into the development of probiotics or other therapeutic applications, as understanding its metabolic capabilities could lead to beneficial uses in gut health or bioremediation. However, more research is needed to fully elucidate its clinical relevance and potential applications in medicine. Overall, while Planomicrobium okeanokoites is not widely recognized as a significant pathogen, its interactions with human health and disease processes warrant further investigation to clarify its role in the microbiome and potential implications for immune response and infection control.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Planomicrobium okeanokoites is a marine bacterium primarily found in coastal waters and sediment environments. This microorganism thrives in brackish water conditions, often associated with estuarine ecosystems where freshwater meets saltwater. Its presence is particularly noted in areas with high organic matter, contributing to the nutrient cycling within these habitats. In terms of ecological roles, P. okeanokoites plays a significant part in the breakdown of organic materials, thus facilitating the decomposition process and enhancing nutrient availability for other organisms. This bacterium is known for its ability to degrade complex organic compounds, which is crucial for maintaining the health of the marine ecosystem. Additionally, Planomicrobium okeanokoites exhibits symbiotic relationships with various marine organisms, potentially aiding in their nutrient uptake and overall health. Its adaptability to varying salinity levels allows it to thrive in fluctuating environments, showcasing its resilience and ecological significance in marine biomes. Overall, the habitats associated with P. okeanokoites are characterized by their dynamic nature, where the interplay of biotic and abiotic factors creates a unique niche for this microorganism, highlighting its importance in the broader context of marine ecology.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Planomicrobium okeanokoites has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where this organism is utilized for its unique metabolic capabilities. It has been documented to participate in fermentation processes, which can be harnessed for the production of valuable metabolites, including organic acids and alcohols. This makes it a candidate for use in the production of bio-based chemicals. In the realm of waste management, Planomicrobium okeanokoites has demonstrated the ability to degrade complex organic materials, making it useful in biodegradation processes. This characteristic can be leveraged in the treatment of wastewater and the breakdown of pollutants, contributing to environmental sustainability. Furthermore, the organism's enzymatic activity is of particular interest in pharmaceutical development. It has been shown to produce enzymes that can be used in the synthesis of pharmaceutical compounds, enhancing the efficiency of drug production processes. Additionally, Planomicrobium okeanokoites has potential applications in biofuel production. Its metabolic pathways can be optimized for the conversion of biomass into biofuels, such as ethanol or biodiesel, through fermentation processes. This aligns with the growing demand for renewable energy sources and the reduction of carbon footprints. Overall, Planomicrobium okeanokoites represents a versatile microorganism with promising applications across multiple industries, particularly in biotechnology, waste management, pharmaceutical development, and biofuel production.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4	openai/gpt-4	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	openai/gpt-4o	openai/gpt-4o	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	google/gemma-7b-it	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Gram staining	gram stain positive	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerotolerant ✗	aerotolerant ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	false	false	true	false	true	true	false	false	false	false	false	false	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	true	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	true	true	true	true	true	true	true	true
Host association	N/A	false	false	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	true	true	true	true	false	false	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	coccus	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	coccus ✓	coccus ✓	coccus ✓	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗

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