Pseudomonas daroniae

General Information

Pseudomonas daroniae is a fascinating microorganism belonging to the genus Pseudomonas, which is known for its metabolic diversity and ecological versatility. This species is particularly interesting due to its ability to thrive in diverse environments, ranging from soil to water systems. One of the most notable characteristics of Pseudomonas daroniae is its potential for bioremediation. It has been observed to degrade various environmental pollutants, making it a valuable candidate for cleaning up contaminated sites. Another unique aspect of Pseudomonas daroniae is its production of secondary metabolites. These compounds can have antimicrobial properties, which opens up possibilities for developing new antibiotics or antifungal agents. The metabolic pathways involved in the synthesis of these secondary metabolites are of significant interest to researchers aiming to harness these properties for pharmaceutical applications. Moreover, Pseudomonas daroniae exhibits a high degree of genetic adaptability, which allows it to survive and proliferate under stressful conditions. This adaptability is often linked to its complex regulatory networks and the presence of various resistance genes, making it a model organism for studying microbial resistance mechanisms. In summary, Pseudomonas daroniae stands out due to its environmental resilience, bioremediation potential, and production of bioactive compounds, making it a valuable subject for both environmental and medical research.

Pseudomonas daroniae is a fascinating bacterium that has garnered attention due to its unique metabolic capabilities and ecological significance. This species is part of the diverse genus Pseudomonas, known for its versatility in various environments, including soil, water, and even as plant symbionts. One of the most interesting aspects of P. daroniae is its ability to degrade a wide range of organic compounds, making it a potential candidate for bioremediation applications. This characteristic allows it to play a crucial role in the detoxification of polluted environments, particularly in the breakdown of hydrocarbons and other environmental contaminants. Another notable feature of P. daroniae is its production of secondary metabolites, which can have antimicrobial properties. This opens up avenues for research into natural product chemistry and the development of new antibiotics. The potential for discovering novel compounds that can combat antibiotic-resistant bacteria is particularly valuable in today's medical landscape. Furthermore, P. daroniae exhibits a remarkable adaptability to various environmental stresses, which makes it an interesting model organism for studying microbial resilience and survival strategies. Understanding how this bacterium thrives in challenging conditions can provide insights into microbial ecology and evolution. Overall, Pseudomonas daroniae stands out not only for its ecological roles but also for its potential applications in biotechnology and medicine.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas daroniae

NCBI ID

2487519

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/327/275/GCF_004327275.1_ASM432727v1

File for sequence-based predictions:
GCF_004327275.1_ASM432727v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas daroniae is a Gram-negative bacterium that has been identified as a potential opportunistic pathogen. It is primarily associated with infections in immunocompromised patients, particularly those with underlying health conditions or those undergoing invasive procedures. Clinical implications of Pseudomonas daroniae include its role in nosocomial infections, where it can cause pneumonia, wound infections, and bacteremia. The organism exhibits notable pathogenicity due to its ability to form biofilms, which enhances its survival in hostile environments and contributes to its virulence. Furthermore, Pseudomonas daroniae has shown antimicrobial resistance, particularly to beta-lactam antibiotics, which complicates treatment options. This resistance is often attributed to the presence of efflux pumps and beta-lactamase enzymes that degrade antibiotics, making infections difficult to manage. In terms of immune evasion, Pseudomonas daroniae can manipulate host immune responses, allowing it to persist in the host and evade detection by immune cells. This characteristic is particularly concerning in hospital settings, where it can lead to outbreaks among vulnerable populations. While research on Pseudomonas daroniae is still emerging, its potential as a pathogen underscores the need for ongoing surveillance and the development of effective therapeutic strategies to combat its associated infections.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas daroniae is a versatile bacterium commonly found in various soil environments and aquatic ecosystems. This microorganism thrives in nutrient-rich conditions, often associated with decaying organic matter, which provides a suitable habitat for its growth and metabolic activities. Its presence is particularly noted in freshwater habitats, where it plays a crucial role in the degradation of organic pollutants, thus contributing to the overall health of the ecosystem. In terrestrial biomes, Pseudomonas daroniae is often found in agricultural soils, where it can enhance soil fertility through its ability to fix nitrogen and promote plant growth. This bacterium engages in symbiotic relationships with various plant species, aiding in nutrient uptake and improving plant resilience against pathogens. Its role in bioremediation is significant, as it can metabolize a range of environmental contaminants, making it a valuable organism for restoring polluted sites. In marine environments, Pseudomonas daroniae has been identified in coastal waters and sediments, where it contributes to the cycling of nutrients and organic matter. Its adaptability to varying salinity levels allows it to thrive in these dynamic ecosystems, where it interacts with other microbial communities, forming complex networks that enhance nutrient availability and energy flow. Overall, Pseudomonas daroniae exemplifies the importance of microorganisms in maintaining ecological balance, promoting plant health, and facilitating the breakdown of pollutants in diverse biomes.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas daroniae has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Pseudomonas daroniae is utilized for its ability to perform biodegradation of environmental pollutants. This capability makes it a valuable asset in waste management, particularly in the treatment of contaminated soils and water, where it can break down harmful compounds, thus aiding in the detoxification process. In the realm of biofuel production, Pseudomonas daroniae has been studied for its metabolic pathways that can convert organic waste into biofuels through fermentation. This process not only helps in waste reduction but also contributes to sustainable energy solutions. Furthermore, the organism has potential applications in pharmaceutical development due to its ability to produce various bioactive compounds. These compounds can be harnessed for their antimicrobial properties, which are crucial in the development of new drugs. Overall, Pseudomonas daroniae exemplifies the versatility of microorganisms in industrial settings, particularly through its roles in biodegradation, fermentation, and the production of valuable biochemical products.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3-haiku:beta	openai/gpt-4o	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemma-7b-it	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	true	false	true	false	true	true	false	false	false	false	false	false	false	false	false	false	false	true	true	true	true	false	false	false	false	true	true
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	false	true	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

Back to Search