Streptomyces decoyicus

General Information

Streptomyces decoyicus is a fascinating microorganism belonging to the genus Streptomyces, which is renowned for its prolific production of secondary metabolites. One of the most notable characteristics of S. decoyicus is its ability to produce a wide array of antibiotics and bioactive compounds. This makes it a valuable organism in the field of biotechnology and pharmaceutical research. Streptomyces species are known for their complex life cycle, which includes the formation of a mycelium and spore chains, contributing to their unique morphology. The genus Streptomyces is also distinguished by its earthy odor, which is due to the production of a compound called geosmin. This characteristic odor is often associated with soil and is a hallmark of the genus. In addition to its antibiotic production, S. decoyicus has been studied for its potential in bioremediation. The organism's metabolic versatility allows it to degrade various environmental pollutants, making it a candidate for cleaning up contaminated sites. The genetic makeup of S. decoyicus is another area of interest. The genome of Streptomyces species is typically large and rich in genes responsible for the biosynthesis of secondary metabolites. This genetic complexity provides a treasure trove of information for researchers looking to discover new drugs and understand the mechanisms of antibiotic resistance. Overall, Streptomyces decoyicus stands out due to its antibiotic production capabilities, environmental adaptability, and genetic richness, making it a valuable subject of study in multiple scientific disciplines.

Streptomyces decoyicus is a fascinating actinobacterium known for its remarkable ability to produce a diverse array of bioactive compounds, including antibiotics and antifungal agents. This species is part of the larger genus Streptomyces, which is renowned for its role in natural product discovery and pharmaceutical development. What makes S. decoyicus particularly interesting is its unique metabolic pathways that allow it to synthesize compounds with potential therapeutic applications. One of the standout features of S. decoyicus is its ability to thrive in various environmental conditions, which contributes to its versatility in producing secondary metabolites. This adaptability not only enhances its survival but also increases the likelihood of discovering novel compounds that could lead to new drug development. Additionally, S. decoyicus has been studied for its interactions with other microorganisms in its habitat, providing insights into microbial ecology and the complex relationships that exist within soil ecosystems. The potential for biotechnological applications is significant, as researchers explore the use of S. decoyicus in bioremediation and sustainable agriculture. Overall, Streptomyces decoyicus stands out as a valuable organism in microbiological research, offering promising avenues for the discovery of new antibiotics and other bioactive substances that could address pressing health challenges.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Kitasatosporales

Family: Streptomycetaceae

Genus: Streptomyces

Species: Streptomyces decoyicus

NCBI ID

249567

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/880/305/GCA_019880305.1_ASM1988030v1

File for sequence-based predictions:
GCA_019880305.1_ASM1988030v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Streptomyces decoyicus is a member of the genus Streptomyces, which is known for its significant role in the production of antibiotics and other bioactive compounds. While S. decoyicus itself is not widely recognized as a human pathogen, its relatives have been implicated in various infections and have clinical relevance due to their potential to produce antimicrobial agents. Clinical implications of S. decoyicus include its potential use in the development of new antibiotics, particularly in the face of rising antimicrobial resistance among common pathogens. Furthermore, the genus Streptomyces is known for its complex interactions with the human microbiome, which can influence immune responses and overall health. Some species have been studied for their potential as probiotics, contributing to gut health and possibly modulating immune responses in beneficial ways. While there are no well-documented outbreaks or direct associations with disease for S. decoyicus, the ongoing research into the genus highlights its importance in both therapeutic applications and the understanding of microbial ecology in human health. The ability of Streptomyces species to evade immune responses through various mechanisms, such as the production of secondary metabolites, further underscores their relevance in clinical microbiology.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Streptomyces decoyicus is a species of actinobacteria commonly found in soil ecosystems and decaying organic matter. This microorganism thrives in environments rich in organic material, where it plays a crucial role in the decomposition process. Its ability to break down complex organic compounds contributes significantly to nutrient cycling within these biomes. Soil Microhabitats: Within the soil, Streptomyces decoyicus occupies various microhabitats, often found in association with plant roots. This proximity allows it to engage in mutualistic relationships with plants, enhancing nutrient availability through the production of bioactive compounds and promoting plant growth. Decomposing Organic Matter: In environments characterized by decaying plant material, Streptomyces decoyicus is instrumental in the breakdown of cellulose and lignin, which are abundant in plant debris. This decomposition not only recycles nutrients back into the soil but also supports a diverse community of other microorganisms, creating a rich and dynamic ecosystem. Interactions with Other Organisms: The species is known for its antibiotic production, which can inhibit the growth of competing bacteria, thus shaping the microbial community structure in its habitat. This competitive advantage allows Streptomyces decoyicus to thrive in nutrient-rich environments while also influencing the overall health of the soil microbiome. In summary, Streptomyces decoyicus is a vital component of terrestrial biomes, particularly in nutrient-rich soils and decaying organic matter, where it contributes to ecological balance through decomposition, nutrient cycling, and interactions with plants and other microorganisms.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Streptomyces decoyicus has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to produce a wide range of bioactive compounds, including antibiotics and enzymes. This organism is particularly valuable in the fermentation process, where it can be harnessed to synthesize secondary metabolites that have pharmaceutical importance. In the realm of waste management, Streptomyces decoyicus has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic materials. This makes it a candidate for use in bioremediation efforts, where it can help in the detoxification of contaminated environments, such as soil and water, by degrading pollutants. Furthermore, the organism's enzymatic activity is of great interest in biofuel production. It can be involved in the decomposition of lignocellulosic biomass, facilitating the conversion of agricultural waste into fermentable sugars, which can then be transformed into biofuels. This process not only contributes to sustainable energy solutions but also aids in reducing waste. In summary, Streptomyces decoyicus is a versatile microorganism with applications spanning pharmaceutical development, biotechnology, waste management, and biofuel production, making it a valuable asset in various industrial sectors.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-flash-1.5	anthropic/claude-3.5-sonnet	google/gemma-7b-it	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro	google/gemini-pro	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	true	true	true	false	false	true	false	false	false	false	true	true	true	true	false	false	false	false	true	true	true	true	true	true	false	false
Host association	FALSE	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	TRUE	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Spore formation	TRUE	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	gamma	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	tail	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗

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