Pseudomonas viciae

General Information

Pseudomonas viciae is a fascinating microorganism belonging to the genus Pseudomonas. This bacterium is particularly interesting due to its plant growth-promoting properties. It has been isolated from the rhizosphere of various plants, where it plays a crucial role in enhancing plant health and productivity. One of the most notable features of Pseudomonas viciae is its ability to produce siderophores, which are compounds that bind and sequester iron from the environment. This is particularly valuable in iron-limited soils, as it helps plants to access this essential nutrient more efficiently. Additionally, Pseudomonas viciae is known for its production of antibiotic compounds that can suppress plant pathogens, thereby protecting crops from diseases. Another unique aspect of Pseudomonas viciae is its involvement in bioremediation. This bacterium has shown potential in breaking down various environmental pollutants, making it a candidate for cleaning up contaminated soils and water bodies. Its metabolic versatility allows it to degrade a wide range of organic compounds, contributing to its ecological importance. From a research perspective, Pseudomonas viciae is valuable for studying plant-microbe interactions and microbial ecology. Understanding how this bacterium interacts with plant roots and other soil microorganisms can provide insights into sustainable agricultural practices and the development of biofertilizers. In summary, Pseudomonas viciae stands out due to its plant growth-promoting abilities, antibiotic production, and bioremediation potential, making it a significant organism in both agricultural and environmental research.

Pseudomonas viciae is a fascinating bacterium primarily known for its role in the rhizosphere of plants, particularly legumes. This organism is notable for its ability to form symbiotic relationships with plant roots, enhancing nutrient uptake and promoting plant growth. Its unique capacity to fix nitrogen makes it particularly valuable in agricultural settings, as it can contribute to soil fertility and reduce the need for chemical fertilizers. One of the most interesting aspects of Pseudomonas viciae is its metabolic versatility, allowing it to thrive in various environments, including soil and plant tissues. This adaptability is attributed to its diverse enzymatic capabilities, which enable it to degrade a wide range of organic compounds. This characteristic not only aids in nutrient cycling but also positions Pseudomonas viciae as a potential agent for bioremediation, helping to clean up contaminated environments. Furthermore, research into Pseudomonas viciae has revealed its potential in biological control, where it can suppress plant pathogens, thereby enhancing crop resilience. Its interactions with other microorganisms in the rhizosphere are also a subject of interest, as they can influence plant health and productivity. Overall, Pseudomonas viciae stands out as a valuable organism in both ecological and agricultural research, with implications for sustainable farming practices and environmental management.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas viciae

NCBI ID

2505979

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/786/035/GCF_004786035.1_ASM478603v1

File for sequence-based predictions:
GCF_004786035.1_ASM478603v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas viciae is a gram-negative bacterium primarily associated with plant environments, particularly legumes. While it is not typically recognized as a human pathogen, its clinical implications can be inferred from its close relatives within the Pseudomonas genus, which are known for their pathogenicity and ability to cause infections in immunocompromised individuals. Pseudomonas viciae may play a role in the microbiome of the human gut, although its specific contributions to human health are not well-documented. In terms of antimicrobial resistance, members of the Pseudomonas genus are notorious for their ability to develop resistance to multiple classes of antibiotics, which poses a significant challenge in clinical settings. This resistance is often attributed to their efflux pumps, biofilm formation, and the acquisition of resistance genes. While Pseudomonas viciae itself has not been directly linked to any major outbreaks or infections in humans, its relatives, such as Pseudomonas aeruginosa, are well-known for causing severe infections in patients with cystic fibrosis, burns, and other compromised health conditions. Understanding the ecological role of Pseudomonas viciae in plant systems may provide insights into its potential interactions with human health, particularly in the context of immune response and microbial ecology. Overall, while Pseudomonas viciae does not have a well-established clinical relevance in human health, its relationship with other pathogenic Pseudomonas species and its potential role in the microbiome warrant further investigation.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas viciae is a bacterium commonly associated with various agricultural ecosystems and soil environments. This microorganism thrives in nutrient-rich soils, particularly those enriched with organic matter, where it plays a crucial role in the nitrogen cycle. Its ability to fix nitrogen makes it an important player in enhancing soil fertility, especially in legume-dominated habitats where it often forms symbiotic relationships with plants such as peas and beans. In these agricultural biomes, Pseudomonas viciae contributes to the health of crops by promoting plant growth and improving nutrient uptake. The bacterium is known for its biocontrol properties, helping to suppress plant pathogens and thus reducing the need for chemical pesticides. This interaction not only benefits the plants but also supports the overall biodiversity of the ecosystem. Furthermore, Pseudomonas viciae exhibits remarkable environmental adaptability, allowing it to thrive in varying conditions, including moisture levels and pH ranges. Its presence in the soil can enhance microbial diversity, leading to a more resilient ecosystem capable of withstanding environmental stresses. Overall, Pseudomonas viciae is a vital component of agricultural biomes, contributing to sustainable farming practices and ecosystem health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas viciae has shown significant potential in various industrial applications across multiple sectors. One of the primary areas of interest is in biotechnology, where Pseudomonas viciae is utilized for its ability to perform biodegradation of environmental pollutants. This capability makes it a valuable asset in waste management, particularly in the treatment of contaminated soils and water, where it can break down harmful substances into less toxic forms. In the realm of biofuel production, Pseudomonas viciae has been studied for its role in the fermentation of organic materials, contributing to the generation of bioethanol and biogas. Its metabolic pathways allow for the efficient conversion of biomass into energy, making it a candidate for sustainable energy solutions. Additionally, Pseudomonas viciae is recognized for its pharmaceutical development potential, particularly in the production of bioactive compounds. The organism's enzymatic activity can be harnessed to synthesize pharmaceuticals or to enhance the efficacy of existing drugs through biotransformation processes. Overall, the versatility of Pseudomonas viciae in fermentation, biodegradation, and enzyme production highlights its importance in advancing industrial processes aimed at sustainability and innovation.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	google/gemma-7b-it	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	openchat/openchat-7b	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 3 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	true	true	false	false	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true
Host association	TRUE	false ✗	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓
Plant pathogenicity	TRUE	true ✓	true ✓	false ✗	true ✓	false ✗	true ✓	false ✗	false ✗	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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