Pandoraea aquatica

General Information

Pandoraea aquatica is a fascinating microorganism that belongs to the genus Pandoraea. This bacterium is particularly interesting due to its environmental versatility and biotechnological potential. Originally isolated from water environments, P. aquatica has demonstrated a remarkable ability to survive and thrive in diverse aquatic habitats, which makes it a subject of interest for studies on microbial ecology and environmental microbiology. One of the most compelling aspects of P. aquatica is its potential in bioremediation. This organism has shown the ability to degrade various pollutants, including aromatic compounds, which are often challenging to break down. This capability positions P. aquatica as a valuable candidate for cleaning up contaminated water bodies and industrial effluents. Moreover, P. aquatica has been studied for its antibiotic resistance profiles. Understanding the mechanisms behind its resistance can provide insights into combating antibiotic-resistant pathogens, which is a growing concern in medical microbiology. The genetic and metabolic pathways that confer this resistance are of particular interest for developing new antimicrobial strategies. In addition to its environmental and medical significance, P. aquatica also holds promise in biotechnological applications. Its metabolic diversity allows it to be used in the synthesis of valuable biochemicals and bioactive compounds. Researchers are exploring its potential in producing enzymes, biofuels, and other industrially relevant products. Overall, Pandoraea aquatica is a microorganism that stands out due to its adaptability, bioremediation potential, and biotechnological applications, making it a valuable subject for ongoing and future research.

Pandoraea aquatica is a fascinating bacterium that was first isolated from a freshwater environment, specifically from a water sample in a tropical region. This organism is particularly interesting due to its ability to thrive in aquatic environments, which sets it apart from many other members of the genus Pandoraea that are typically associated with soil or plant materials. Its ecological niche suggests a role in the biodegradation of organic compounds, making it a potential candidate for bioremediation applications in freshwater ecosystems. One of the unique aspects of P. aquatica is its metabolic versatility, allowing it to utilize a variety of carbon sources. This adaptability not only enhances its survival in fluctuating environmental conditions but also makes it a valuable organism for studies focused on microbial ecology and environmental microbiology. Additionally, Pandoraea aquatica has garnered attention in the field of biotechnology due to its potential applications in the production of bioactive compounds. Research into its genetic and metabolic pathways could lead to the discovery of novel enzymes or metabolites that may have industrial or pharmaceutical significance. Overall, Pandoraea aquatica represents a unique intersection of environmental science and biotechnology, making it a subject of interest for researchers aiming to understand microbial interactions in aquatic ecosystems and explore their practical applications.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Pandoraea

Species: Pandoraea aquatica

NCBI ID

2508290

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/459/565/GCA_902459565.1_LMG_31011

File for sequence-based predictions:
GCA_902459565.1_LMG_31011_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pandoraea aquatica is a Gram-negative bacterium that has been increasingly recognized in clinical settings, particularly in patients with cystic fibrosis and other chronic lung diseases. It is known to be associated with pulmonary infections, contributing to the complex microbiota of the lungs in these patients. The presence of Pandoraea aquatica in respiratory samples has been linked to disease exacerbations, highlighting its potential role as a pathogen in compromised individuals. One of the significant clinical implications of Pandoraea aquatica is its antimicrobial resistance. This organism exhibits resistance to multiple classes of antibiotics, which complicates treatment options for infections. The resistance mechanisms include the production of beta-lactamases and other efflux pumps, making it challenging to eradicate from infected sites. In terms of immune evasion, Pandoraea aquatica can alter its surface structures and produce biofilms, which protect it from both the host immune response and antibiotic treatment. This ability to form biofilms is particularly concerning in the context of chronic infections, as it allows the bacteria to persist in the lungs over extended periods. While Pandoraea aquatica is primarily recognized for its pathogenic potential, there is ongoing research into its role in the human microbiome and its potential applications in probiotics or therapeutics. However, more studies are needed to fully understand its interactions with the human body and its implications for health and disease management. Overall, the clinical relevance of Pandoraea aquatica underscores the importance of monitoring and understanding this organism in the context of respiratory diseases.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pandoraea aquatica is a bacterium that is primarily associated with freshwater environments, particularly in areas where organic matter is abundant. This microorganism thrives in aquatic habitats such as rivers, lakes, and wetlands, where it plays a crucial role in the decomposition of organic materials. Its presence is often linked to the breakdown of complex organic compounds, contributing to nutrient cycling within these ecosystems. In these freshwater biomes, Pandoraea aquatica exhibits notable interactions with its surroundings. It is known to engage in symbiotic relationships with various aquatic organisms, including plants and other microorganisms. This symbiosis can enhance nutrient availability for plants, promoting growth and health in these ecosystems. Additionally, Pandoraea aquatica demonstrates remarkable environmental adaptation capabilities, allowing it to survive in varying conditions of temperature, pH, and nutrient availability. This adaptability is essential for its survival in the dynamic environments of freshwater ecosystems, where fluctuations in conditions can be significant. Overall, Pandoraea aquatica is an important player in the ecological balance of freshwater habitats, contributing to the health and sustainability of these environments through its roles in decomposition and nutrient cycling.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pandoraea aquatica has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where Pandoraea aquatica is utilized for its unique metabolic capabilities. This organism is known for its ability to degrade complex organic compounds, making it valuable in waste management processes. For instance, it can be employed in the treatment of wastewater, where it helps in the breakdown of pollutants, thus contributing to environmental sustainability. In the realm of biofuel production, Pandoraea aquatica has been studied for its role in fermentation processes. It can convert organic substrates into biofuels, such as ethanol, through its metabolic pathways. This capability not only aids in renewable energy production but also helps in reducing reliance on fossil fuels. Furthermore, Pandoraea aquatica has potential applications in pharmaceutical development. Its enzymatic activities can be harnessed for the production of bioactive compounds, which may lead to the discovery of new drugs or therapeutic agents. The organism's ability to produce specific enzymes can facilitate the synthesis of complex molecules that are often required in the pharmaceutical industry. Overall, Pandoraea aquatica demonstrates a multifaceted utility across various sectors, particularly in biodegradation, enzyme production, and waste treatment, making it a promising candidate for future industrial applications.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-pro-1.5	google/gemini-flash-1.5	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	mistralai/mistral-7b-instruct	google/gemini-pro	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Animal pathogenicity	N/A	true	true	false	false	false	false	true	true	true	false	false	false	false	true	true	false	false	false	false	false	false	false	false	true	true	false	false
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	false	false	true	true	true	true	true	false	false	true	true	false	false	true	true	true	true	true	true	true	true	false	false
Host association	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	false	false	true	true	false	false	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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