Pandoraea soli

General Information

Pandoraea soli is a fascinating microorganism that belongs to the genus Pandoraea. This genus is known for its diverse metabolic capabilities and environmental adaptability. One of the most intriguing aspects of Pandoraea soli is its potential for bioremediation. This bacterium has been isolated from soil environments, where it plays a crucial role in breaking down complex organic compounds, including pollutants. Pandoraea soli exhibits a remarkable ability to degrade various aromatic hydrocarbons, making it a valuable candidate for cleaning up contaminated environments. Its metabolic versatility allows it to thrive in diverse ecological niches, contributing to its resilience and adaptability. Another noteworthy feature of Pandoraea soli is its potential in biotechnology. The enzymes produced by this bacterium are of significant interest for industrial applications, particularly in the fields of waste management and environmental sustainability. Researchers are exploring the use of Pandoraea soli in the development of bio-based solutions for pollution control and resource recovery. In addition to its environmental applications, Pandoraea soli is also studied for its interactions with other microorganisms and plants. Understanding these interactions can provide insights into soil health and the dynamics of microbial communities. This knowledge is essential for developing sustainable agricultural practices and improving crop yields. Overall, Pandoraea soli stands out due to its bioremediation potential, metabolic diversity, and biotechnological applications. Its ability to degrade pollutants and contribute to environmental sustainability makes it a valuable subject of study in microbial ecology and environmental science.

Pandoraea soli is a fascinating bacterium that was first isolated from a soil sample in a desert environment. This organism is particularly interesting due to its ability to thrive in extreme conditions, showcasing remarkable adaptability to nutrient-poor environments. Its unique metabolic capabilities allow it to utilize a variety of organic compounds, making it a potential candidate for bioremediation applications, especially in the degradation of pollutants in arid soils. One of the standout features of Pandoraea soli is its genetic diversity, which has been a subject of research in understanding microbial evolution and adaptation. The genome of this bacterium contains genes that are involved in the degradation of complex organic molecules, which could be valuable in biotechnological applications aimed at environmental cleanup. Additionally, Pandoraea soli has been studied for its potential in plant growth promotion. Some strains have shown the ability to enhance plant growth by improving nutrient availability in the soil, which could have significant implications for sustainable agriculture practices. Overall, Pandoraea soli represents a unique intersection of environmental microbiology and biotechnology, making it a valuable organism for researchers interested in ecological resilience and the development of innovative solutions for environmental challenges.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Pandoraea

Species: Pandoraea soli

NCBI ID

2508293

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/459/595/GCA_902459595.1_LMG_31014

File for sequence-based predictions:
GCA_902459595.1_LMG_31014_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pandoraea soli is a gram-negative bacterium that has been associated with various clinical implications, particularly in immunocompromised patients. It is known to cause infections such as pneumonia and bacteremia, especially in individuals with underlying health conditions like cystic fibrosis or those undergoing prolonged hospitalization. The pathogenicity of Pandoraea soli is attributed to its ability to form biofilms and its resistance to multiple antibiotics, which complicates treatment options. Antimicrobial resistance mechanisms in Pandoraea soli include the production of beta-lactamases and efflux pumps, making it a significant concern in clinical settings. Furthermore, its role in nosocomial infections highlights the importance of infection control measures in healthcare environments. While research on Pandoraea soli is still emerging, its presence in clinical specimens underscores the need for awareness regarding its potential to cause serious infections in vulnerable populations.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pandoraea soli is a species of bacteria that is primarily associated with soil environments and has been isolated from various terrestrial habitats. This microorganism thrives in nutrient-rich soils, particularly those that are influenced by organic matter decomposition. Its presence is often linked to the breakdown of complex organic compounds, playing a crucial role in nutrient cycling within the ecosystem. In terms of ecological niches, Pandoraea soli is commonly found in agricultural soils and natural grasslands, where it contributes to the overall soil health by enhancing soil fertility and promoting plant growth through its interactions with plant roots. This bacterium can engage in symbiotic relationships with certain plants, aiding in nutrient uptake, particularly nitrogen, which is essential for plant development. Additionally, Pandoraea soli exhibits remarkable environmental adaptability, allowing it to survive in varying conditions, including fluctuations in moisture and temperature. Its metabolic versatility enables it to utilize a range of organic substrates, making it a key player in the decomposition process and the maintenance of soil structure. Overall, Pandoraea soli is an important microorganism within its biome, contributing to the health and sustainability of terrestrial ecosystems through its roles in nutrient cycling, plant interactions, and soil quality enhancement.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pandoraea soli has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where Pandoraea soli is utilized for its unique metabolic capabilities. This organism is known for its ability to degrade complex organic compounds, making it valuable in biodegradation processes, particularly in the treatment of contaminated environments. Its enzymatic activity allows it to break down pollutants, thus contributing to effective waste management strategies. In the realm of biofuel production, Pandoraea soli can be involved in fermentation processes that convert biomass into bioethanol. The organism's metabolic pathways can be harnessed to optimize the conversion of lignocellulosic materials, which are abundant and renewable resources, into sustainable energy sources. Furthermore, Pandoraea soli has potential applications in pharmaceutical development. Its ability to produce various secondary metabolites can be explored for the development of new drugs or therapeutic agents. The organism's unique biochemical properties may lead to the discovery of novel compounds with antimicrobial or antifungal activities. Overall, Pandoraea soli represents a promising candidate for advancing technologies in waste management, biofuel production, and pharmaceutical development, showcasing its versatility and importance in modern industrial processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-pro-1.5	google/gemini-flash-1.5	google/gemma-7b-it	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain positive ✗	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	true	true	false	false	true	false	false	false	false	false	false	false	false	true	true	false	false	false	false	true	true	false	false	false	false	false	false	true	true
Biosafety level	biosafety level 2	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓
Health association	N/A	true	true	true	true	true	true	false	false	false	false	false	true	true	true	true	true	true	false	false	true	true	true	true	false	false	false	false	true	true
Host association	N/A	true	true	false	false	true	true	false	false	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	gamma	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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