Flavobacterium rhamnosiphilum

General Information

Flavobacterium rhamnosiphilum is a fascinating microorganism belonging to the genus Flavobacterium. This species is particularly interesting due to its unique metabolic capabilities and its potential applications in biotechnology and environmental science. One of the most notable characteristics of F. rhamnosiphilum is its ability to degrade complex polysaccharides, including rhamnogalacturonan, a component of pectin. This ability makes it valuable for biodegradation and bioremediation processes, as it can help break down plant materials and other organic matter in the environment. Additionally, Flavobacterium rhamnosiphilum has been studied for its role in the microbial ecology of soil and aquatic environments. Its presence and activity can influence nutrient cycling and the overall health of these ecosystems. From a research perspective, the enzymes produced by F. rhamnosiphilum are of significant interest. These enzymes, particularly those involved in polysaccharide degradation, have potential applications in the food industry, agriculture, and waste management. For example, they could be used to improve the efficiency of composting processes or to develop new methods for processing agricultural by-products. In summary, Flavobacterium rhamnosiphilum is a microorganism with remarkable enzymatic properties and environmental significance, making it a valuable subject of study for scientists interested in biodegradation, microbial ecology, and industrial applications.

Flavobacterium rhamnosiphilum is a fascinating bacterium belonging to the genus Flavobacterium, which is known for its diverse ecological roles and unique metabolic capabilities. This organism is particularly interesting due to its ability to degrade complex organic compounds, making it valuable in bioremediation efforts. Its enzymatic repertoire allows it to break down polysaccharides and other macromolecules, which can be crucial in environments rich in organic waste or in the treatment of contaminated sites. One of the standout features of F. rhamnosiphilum is its capacity to utilize rhamnose, a sugar that is not commonly metabolized by many other bacteria. This ability not only highlights its metabolic versatility but also positions it as a potential candidate for biotechnological applications, such as the production of biofuels or other valuable biochemicals from plant biomass. Additionally, members of the Flavobacterium genus are often found in aquatic environments, contributing to the cycling of nutrients and playing a role in the degradation of organic matter in marine and freshwater ecosystems. This ecological significance underscores the importance of studying F. rhamnosiphilum to better understand microbial interactions in these habitats and their impact on ecosystem health. Overall, Flavobacterium rhamnosiphilum stands out not only for its unique metabolic capabilities but also for its potential applications in environmental biotechnology, making it a valuable subject for further research.

Taxonomy

Superkingdom: Bacteria

Phylum: Bacteroidota

Class: Flavobacteriia

Order: Flavobacteriales

Family: Flavobacteriaceae

Genus: Flavobacterium

Species: Flavobacterium rhamnosiphilum

NCBI ID

2541724

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/349/195/GCF_004349195.1_ASM434919v1

File for sequence-based predictions:
GCF_004349195.1_ASM434919v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Flavobacterium rhamnosiphilum is a member of the Flavobacteriaceae family, primarily known for its role in aquatic environments. While it is not commonly associated with human disease, its clinical relevance can be inferred from its environmental presence and potential interactions with human health. Clinical implications of F. rhamnosiphilum may include its role in biofilm formation in aquatic systems, which can lead to contamination of water supplies and subsequent infections in immunocompromised individuals. Furthermore, its ability to degrade organic matter suggests a potential role in bioremediation, which could indirectly impact human health by improving water quality. However, there is limited documentation on its pathogenicity or specific disease associations in humans. The organism's interactions with the human microbiome are not well-studied, and its immune evasion strategies remain largely unknown. As of now, there are no known cases of antimicrobial resistance linked to F. rhamnosiphilum, nor are there established medical applications such as probiotics, vaccines, or therapeutics directly involving this species. Overall, while F. rhamnosiphilum may not be a significant pathogen, its environmental presence warrants further investigation into its potential impacts on human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Flavobacterium rhamnosiphilum is a bacterium commonly associated with various aquatic environments, particularly in freshwater ecosystems. This microorganism thrives in nutrient-rich waters, often found in the vicinity of decaying organic matter, where it plays a crucial role in the decomposition process. Its presence is typically noted in environments such as lakes, rivers, and wetlands, where it contributes to the cycling of nutrients and organic materials. Ecological Niches: _Flavobacterium rhamnosiphilum occupies a unique ecological niche as a decomposer, breaking down complex organic compounds and thus facilitating nutrient availability for other organisms in the ecosystem. This bacterium is particularly adept at utilizing polysaccharides, which are abundant in decaying plant material, making it an essential player in the detrital food web. Habitat Features: The habitats where Flavobacterium rhamnosiphilum is found are characterized by high organic matter content and variable oxygen levels, which can fluctuate based on the decomposition processes occurring in the water. These environments often support a diverse microbial community, where Flavobacterium rhamnosiphilum interacts with other microorganisms, including fungi and protozoa, in a complex web of symbiotic relationships. Environmental Adaptation: This bacterium exhibits remarkable adaptability to varying environmental conditions, including changes in temperature and pH levels. Its ability to thrive in both aerobic and anaerobic conditions allows it to occupy a wide range of habitats, from shallow ponds to deeper lake sediments. Furthermore, Flavobacterium rhamnosiphilum can respond to shifts in nutrient availability, making it a resilient component of the microbial community in freshwater ecosystems._

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Flavobacterium rhamnosiphilum has shown potential in various industrial applications, particularly in the fields of biotechnology and waste management. This organism is known for its ability to degrade complex organic compounds, making it a candidate for biodegradation processes in contaminated environments. Its enzymatic activity allows it to break down pollutants, which can be harnessed for effective waste treatment solutions. In the realm of biofuel production, Flavobacterium rhamnosiphilum may contribute to the conversion of biomass into biofuels through fermentation processes. By utilizing its metabolic pathways, this microorganism can potentially enhance the efficiency of biofuel production from agricultural waste or other organic materials. Moreover, the organism's unique metabolic capabilities could be explored in pharmaceutical development, particularly in the synthesis of bioactive compounds. Its ability to produce specific enzymes may facilitate the development of novel drugs or therapeutic agents. Overall, Flavobacterium rhamnosiphilum presents a promising avenue for innovation in environmental biotechnology, renewable energy, and healthcare, with its applications rooted in biodegradation, fermentation, and enzyme production.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	TRUE	true ✓	true ✓	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	false	true	true	false	false	true	true	true	true	false	false	true	true	true	true	true	true	false	false	true	true	true	true	true	true
Host association	N/A	false	false	true	true	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	true	true	false	false	true	true
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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