Pseudomonas yangonensis

General Information

Pseudomonas yangonensis is a fascinating bacterium that belongs to the genus Pseudomonas, which is known for its metabolic diversity and adaptability to various environments. This species was first isolated from a soil sample in Yangon, Myanmar, which highlights its potential role in soil ecosystems and its adaptability to different environmental conditions. One of the most intriguing aspects of Pseudomonas yangonensis is its ability to produce a variety of secondary metabolites. These compounds can have antimicrobial properties, making this bacterium a subject of interest for the development of new antibiotics or biocontrol agents. The production of these metabolites also suggests that Pseudomonas yangonensis could play a role in natural soil health by inhibiting the growth of pathogenic microorganisms. Additionally, Pseudomonas yangonensis exhibits a high degree of genetic plasticity, which allows it to adapt to and thrive in diverse environments. This genetic adaptability is a hallmark of the Pseudomonas genus and makes Pseudomonas yangonensis a valuable model organism for studying microbial evolution and adaptation. From a biotechnological perspective, Pseudomonas yangonensis has potential applications in bioremediation. Its metabolic capabilities enable it to degrade various environmental pollutants, including hydrocarbons and heavy metals. This makes it a promising candidate for cleaning up contaminated sites and contributing to environmental sustainability. In summary, Pseudomonas yangonensis is a bacterium of significant interest due to its metabolic versatility, production of secondary metabolites, and potential applications in bioremediation. Its adaptability and genetic plasticity further underscore its value in both ecological studies and biotechnological applications.

Pseudomonas yangonensis is a fascinating bacterium that was first isolated from a soil sample in Yangon, Myanmar. This species is part of the diverse genus Pseudomonas, known for its metabolic versatility and ability to thrive in various environments. One of the most interesting aspects of P. yangonensis is its potential for bioremediation, as it has shown the ability to degrade a range of environmental pollutants, including hydrocarbons and heavy metals. This characteristic makes it a valuable organism for research in environmental microbiology and biotechnology, particularly in efforts to clean up contaminated sites. Additionally, P. yangonensis exhibits unique biochemical properties that distinguish it from other members of the Pseudomonas genus. Its ability to utilize various carbon sources allows it to adapt to different ecological niches, which is a subject of interest for studies on microbial ecology and evolution. Furthermore, the genomic analysis of P. yangonensis has revealed genes that may confer resistance to certain antibiotics, raising important questions about the implications of antibiotic resistance in environmental bacteria. Overall, the study of Pseudomonas yangonensis not only enhances our understanding of microbial diversity but also opens avenues for practical applications in environmental management and public health.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas yangonensis

NCBI ID

2579922

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/932/815/GCF_009932815.1_ASM993281v1

File for sequence-based predictions:
GCF_009932815.1_ASM993281v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas yangonensis is a relatively newly identified species within the genus Pseudomonas, which is known for its clinical significance. This bacterium has been associated with various infections, particularly in immunocompromised patients. Its relevance in human health is underscored by its potential to cause nosocomial infections, especially in settings such as hospitals where patients may have open wounds or are undergoing invasive procedures. One of the critical aspects of Pseudomonas yangonensis is its pathogenicity. Like other members of the Pseudomonas genus, it possesses virulence factors that enable it to adhere to surfaces, evade the immune response, and form biofilms. These biofilms can complicate treatment and lead to chronic infections, making it a significant concern in clinical settings. In terms of antimicrobial resistance, Pseudomonas yangonensis may exhibit resistance to multiple classes of antibiotics, similar to other Pseudomonas species. This resistance can be attributed to various mechanisms, including the production of beta-lactamases, efflux pumps, and alterations in target sites. The emergence of resistant strains poses a challenge for effective treatment options, necessitating ongoing surveillance and research into alternative therapies. While specific medical applications of Pseudomonas yangonensis are not well-documented, the broader genus Pseudomonas has been explored for potential use in bioremediation and as a model organism in microbiological studies. However, the clinical implications of Pseudomonas yangonensis primarily revolve around its role as a pathogen and its impact on patient outcomes in healthcare settings. Further research is needed to fully understand its epidemiology, virulence factors, and potential therapeutic targets.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas yangonensis is a versatile bacterium commonly found in various habitat types that include both terrestrial and aquatic environments. This microorganism thrives particularly well in freshwater ecosystems, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its ability to degrade a wide range of organic compounds makes it an important player in the biogeochemical cycles of these environments, contributing to the overall health and stability of the ecosystem. In addition to freshwater habitats, Pseudomonas yangonensis has been documented in soil environments, where it interacts with plant roots and other soil microorganisms. This interaction can lead to beneficial effects such as enhanced nutrient availability for plants, showcasing its role in plant-microbe symbiosis. The bacterium's adaptability to various soil conditions allows it to thrive in both nutrient-rich and nutrient-poor soils, making it a key component of soil health. Furthermore, Pseudomonas yangonensis is known for its resilience in polluted environments, where it can degrade toxic compounds, thus aiding in bioremediation efforts. Its metabolic versatility enables it to survive in conditions that may be inhospitable to other organisms, highlighting its importance in environmental adaptation and restoration ecology. Overall, Pseudomonas yangonensis exemplifies the intricate relationships within its biomes, contributing to ecological balance and demonstrating the significance of microbial life in maintaining ecosystem functions.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas yangonensis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to produce enzymes that can be harnessed in various biochemical processes. For instance, its enzymatic activity can be applied in biodegradation, breaking down complex organic compounds, which is particularly useful in waste management and environmental cleanup efforts. In the realm of waste management, Pseudomonas yangonensis has been documented to effectively degrade pollutants, including hydrocarbons and heavy metals, making it a valuable organism for bioremediation processes. This capability allows for the detoxification of contaminated sites, contributing to environmental sustainability. Furthermore, this microorganism has potential applications in biofuel production. Its metabolic pathways can be exploited in fermentation processes to convert organic substrates into biofuels, such as ethanol or biodiesel, thereby supporting the shift towards renewable energy sources. In pharmaceutical development, Pseudomonas yangonensis may also play a role in the production of bioactive compounds, which can be further explored for their therapeutic properties. The organism's ability to synthesize various metabolites can lead to the discovery of new drugs or health supplements. Overall, the versatility of Pseudomonas yangonensis in these industrial sectors highlights its importance as a microorganism with promising applications in biotechnology, waste management, biofuel production, and pharmaceutical development.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	N/A	false	false	true	true	false	false	false	true	false	false	false	false	false	false	false	true	true	false	false	true	true	true	true	true	true	true	true
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false	false	false
Host association	N/A	false	false	true	true	true	true	true	true	true	false	false	false	false	false	false	true	true	false	false	true	true	false	false	false	false	true	true
Plant pathogenicity	FALSE	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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