Gordonia zhaorongruii

General Information

Gordonia zhaorongruii is a fascinating microorganism belonging to the genus Gordonia, which is known for its diverse metabolic capabilities and environmental resilience. This species is particularly interesting due to its ability to degrade a variety of complex organic compounds, making it valuable in bioremediation efforts. One of the most notable characteristics of Gordonia zhaorongruii is its capacity to break down pollutants such as polycyclic aromatic hydrocarbons (PAHs) and other recalcitrant compounds. This ability is crucial for cleaning up contaminated environments, especially in areas affected by industrial pollution. Additionally, Gordonia zhaorongruii has been studied for its potential in biotechnological applications, including the production of bioactive compounds and enzymes. The organism's unique metabolic pathways allow it to synthesize valuable secondary metabolites that could be harnessed for pharmaceutical or industrial purposes. Another key feature of Gordonia zhaorongruii is its adaptability to various environmental conditions, which underscores its potential for use in diverse bioremediation scenarios. Its resilience and metabolic versatility make it a subject of ongoing research, as scientists aim to unlock its full potential for environmental and industrial applications. In summary, Gordonia zhaorongruii stands out due to its biodegradation capabilities, biotechnological potential, and environmental adaptability, making it a microorganism of significant interest in both scientific research and practical applications.

Gordonia zhaorongruii is a fascinating actinobacterial species that has garnered attention due to its unique metabolic capabilities and ecological significance. This microorganism is notable for its ability to degrade a variety of complex organic compounds, particularly those found in environmental pollutants. Its capacity to metabolize aromatic compounds makes it a potential candidate for bioremediation applications, where it could be employed to clean up contaminated sites, especially those affected by industrial waste and petroleum products. One of the most interesting aspects of Gordonia zhaorongruii is its robustness in diverse environments. It has been isolated from soil and other natural habitats, indicating its adaptability and resilience. This adaptability is crucial for its survival in fluctuating environmental conditions, which is a characteristic that researchers find valuable for studying microbial ecology and evolution. Additionally, Gordonia zhaorongruii is part of a genus known for producing bioactive compounds. These compounds have potential pharmaceutical applications, making this species a subject of interest in drug discovery and development. The exploration of its secondary metabolites could lead to the identification of novel antibiotics or other therapeutic agents. Furthermore, the genomic analysis of Gordonia zhaorongruii has revealed insights into its metabolic pathways, which are of great interest to microbiologists and biochemists. Understanding these pathways can provide a deeper comprehension of how microorganisms interact with their environment and how they can be harnessed for biotechnological applications. In summary, Gordonia zhaorongruii stands out due to its biodegradation capabilities, environmental adaptability, and potential for biotechnological innovations. Its study not only contributes to our understanding of microbial life but also holds promise for practical applications in environmental science and medicine.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Gordoniaceae

Genus: Gordonia

Species: Gordonia zhaorongruii

NCBI ID

2597659

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/007/559/005/GCF_007559005.1_ASM755900v1

File for sequence-based predictions:
GCF_007559005.1_ASM755900v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia zhaorongruii is a member of the genus Gordonia, which is known for its environmental resilience and ability to degrade various organic compounds. While Gordonia zhaorongruii is not as widely studied as some other Gordonia species, it has been associated with opportunistic infections in immunocompromised patients. Its clinical relevance primarily stems from its potential to cause infections in individuals with weakened immune systems, such as those undergoing chemotherapy or with chronic diseases. The organism has been isolated from clinical specimens, indicating its role as a pathogen in certain contexts. One of the notable aspects of Gordonia zhaorongruii is its antimicrobial resistance. Like many members of the Gordonia genus, it exhibits resistance to multiple antibiotics, which complicates treatment options for infections. This resistance is often attributed to the presence of efflux pumps and the ability to form biofilms, which enhance its survival in hostile environments, including the human body. In terms of immune evasion strategies, Gordonia zhaorongruii may utilize mechanisms similar to other Gordonia species, such as altering surface antigens and producing extracellular polysaccharides that can hinder phagocytosis by immune cells. This ability to evade the immune response can lead to persistent infections, particularly in patients with compromised immune systems. While there are no widely recognized medical applications of Gordonia zhaorongruii in terms of probiotics or therapeutics, its environmental significance in bioremediation processes highlights its potential utility in degrading pollutants. However, further research is needed to fully understand its clinical implications and potential therapeutic uses.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Gordonia zhaorongruii is a species of actinobacteria that is primarily associated with soil environments and wastewater treatment systems. This microorganism thrives in nutrient-rich conditions, often found in areas where organic matter is abundant, such as compost heaps and decaying plant material. Its ability to degrade complex organic compounds, particularly xenobiotics and polycyclic aromatic hydrocarbons (PAHs), makes it a crucial player in bioremediation processes, helping to clean up contaminated environments. In the context of wastewater treatment, Gordonia zhaorongruii contributes to the breakdown of pollutants, enhancing the efficiency of microbial communities involved in the purification process. This organism exhibits a notable symbiotic relationship with other microorganisms, facilitating the degradation of harmful substances and promoting nutrient cycling within the ecosystem. Furthermore, Gordonia zhaorongruii demonstrates remarkable environmental adaptability, allowing it to survive in varying conditions, including high salinity and extreme pH levels. This resilience enables it to occupy diverse ecological niches, making it an important organism in both natural and engineered environments. Its role in the ecosystem is underscored by its contribution to soil health and water quality, highlighting its significance in maintaining ecological balance.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia zhaorongruii has shown significant potential in various industrial applications, particularly in the fields of biotechnology, waste management, and bioremediation. This actinobacterium is known for its ability to degrade a wide range of environmental pollutants, making it a valuable asset in waste treatment processes. Its enzymatic capabilities allow it to break down complex organic compounds, including hydrocarbons, which are prevalent in industrial waste. In the realm of biotechnology, Gordonia zhaorongruii is utilized in the production of specific enzymes that can be harnessed for various applications, including the degradation of plastics and other synthetic materials. This enzymatic activity is crucial for developing sustainable methods to manage plastic waste, contributing to a circular economy. Moreover, the organism has been explored for its role in biofuel production. By employing fermentation processes, Gordonia zhaorongruii can convert biomass into biofuels, providing an alternative energy source that is more environmentally friendly compared to fossil fuels. In pharmaceutical development, the unique metabolic pathways of Gordonia zhaorongruii are being studied for the potential synthesis of novel compounds that could lead to new drug discoveries. Its ability to produce secondary metabolites may open avenues for the development of antibiotics or other therapeutic agents. Overall, Gordonia zhaorongruii exemplifies the versatility of microorganisms in addressing contemporary industrial challenges, particularly in enhancing sustainability and efficiency in various sectors.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	openai/gpt-3.5-turbo-0125	anthropic/claude-3.5-sonnet	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro	google/gemini-pro	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	false	true	true	true	true	false	false	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	false	true	true	true	false	true	true	false	false	false	false	true	true	false	false	true	true	true	true	false	false	true	true	true	true
Host association	N/A	true	false	false	true	true	false	false	true	true	false	false	false	false	false	false	false	false	true	true	true	true	false	false	true	true	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	coccus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	coccus

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