Paraburkholderia madseniana

General Information

Paraburkholderia madseniana is a fascinating microorganism that belongs to the genus Paraburkholderia, which is known for its diverse metabolic capabilities and environmental versatility. One of the most intriguing aspects of P. madseniana is its ability to thrive in a variety of ecological niches, including soil and water environments. This adaptability makes it a valuable subject for studying microbial ecology and environmental microbiology. A key characteristic of P. madseniana is its potential for bioremediation. Members of the Paraburkholderia genus are known for their ability to degrade a wide range of organic pollutants, including aromatic compounds and pesticides. This makes P. madseniana particularly interesting for research focused on cleaning up contaminated environments. Another notable feature of P. madseniana is its symbiotic relationships with plants. Some species within the Paraburkholderia genus are known to promote plant growth by fixing nitrogen or by producing plant growth-promoting substances. This symbiotic interaction can be crucial for sustainable agriculture and the development of biofertilizers. From a genetic perspective, P. madseniana offers a rich resource for studying horizontal gene transfer and genetic diversity. The genome of P. madseniana contains numerous genes that are likely acquired through horizontal gene transfer, which can provide insights into microbial evolution and adaptation. In summary, Paraburkholderia madseniana is a microorganism of significant interest due to its environmental versatility, potential for bioremediation, symbiotic relationships with plants, and genetic diversity. These characteristics make it a valuable model organism for a wide range of scientific research areas.

Paraburkholderia madseniana is a fascinating bacterium that belongs to the genus Paraburkholderia, which is known for its diverse metabolic capabilities and ecological significance. This species was first isolated from a contaminated environment, showcasing its potential role in bioremediation processes. One of the most interesting aspects of P. madseniana is its ability to degrade a variety of organic pollutants, making it a valuable organism for environmental cleanup efforts. Its metabolic versatility allows it to utilize different carbon sources, which is crucial for survival in fluctuating environments. Additionally, P. madseniana has been studied for its interactions with plants, particularly in promoting plant growth and health. This plant-associated behavior highlights its potential as a biofertilizer, which could lead to sustainable agricultural practices. The bacterium's ability to form symbiotic relationships with plants can enhance nutrient uptake, thereby improving crop yields. Furthermore, research into the genomic and biochemical pathways of P. madseniana has revealed insights into its resistance mechanisms against various environmental stressors. Understanding these mechanisms can provide valuable information for developing strategies to enhance the resilience of other microorganisms in similar environments. Overall, Paraburkholderia madseniana stands out as a unique organism with significant implications for environmental science and agriculture.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Burkholderiaceae

Genus: Paraburkholderia

Species: Paraburkholderia madseniana

NCBI ID

2599607

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/690/905/GCF_009690905.1_ASM969090v1

File for sequence-based predictions:
GCF_009690905.1_ASM969090v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia madseniana has been identified as a member of the Burkholderia genus, which is known for its diverse ecological roles and potential clinical implications. While specific studies on P. madseniana are limited, its close relatives in the Burkholderia genus have been associated with various infections and diseases. Notably, members of this genus can be opportunistic pathogens, particularly in immunocompromised individuals, leading to serious conditions such as pneumonia, sepsis, and wound infections. One of the significant concerns regarding P. madseniana and its relatives is their potential for antimicrobial resistance. Many Burkholderia species exhibit resistance to multiple classes of antibiotics, complicating treatment options for infections. This resistance is often attributed to the presence of efflux pumps, beta-lactamases, and other resistance mechanisms that allow these organisms to survive in hostile environments, including the presence of antimicrobial agents. In terms of human health, P. madseniana may also play a role in the microbiome, although its specific contributions are not well-documented. The interaction of this organism with the human immune system could involve various immune evasion strategies, such as the production of biofilms, which protect the bacteria from host defenses and antibiotic treatment. While there are no widely recognized medical applications of P. madseniana at this time, ongoing research into the Burkholderia genus may reveal potential uses in biotechnology or environmental applications, such as bioremediation. However, the clinical implications of P. madseniana remain an area of interest, particularly in understanding its pathogenic potential and role in human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Paraburkholderia madseniana is a versatile microorganism commonly associated with a variety of soil ecosystems and aquatic environments. This bacterium thrives particularly in nutrient-rich soils and sediments, where it plays a crucial role in the cycling of nutrients, especially nitrogen. Its ability to fix nitrogen makes it an important player in enhancing soil fertility and promoting plant growth, particularly in agricultural biomes where it can be found in association with root systems of various plants, contributing to symbiotic relationships that benefit both the plant and the bacterium. In wetland ecosystems, Paraburkholderia madseniana can be found in anaerobic conditions, where it participates in the degradation of organic matter, thus contributing to the overall health of the ecosystem. This bacterium is also known for its ability to degrade pollutants, making it significant in bioremediation efforts in contaminated environments. Overall, Paraburkholderia madseniana exemplifies the intricate relationships within its biomes, showcasing its adaptability and essential functions in maintaining ecological balance.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Paraburkholderia madseniana has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Paraburkholderia madseniana is utilized for its ability to perform biodegradation of environmental pollutants, particularly in contaminated soils and water. This capability makes it a valuable organism in waste management, as it can help in the breakdown of toxic compounds, thus aiding in the remediation of polluted sites. In the realm of biofuel production, Paraburkholderia madseniana has been studied for its metabolic pathways that can convert organic materials into biofuels through fermentation. This process not only contributes to sustainable energy solutions but also helps in reducing waste by utilizing agricultural residues and other organic waste materials. Furthermore, the organism has potential applications in pharmaceutical development due to its ability to produce various bioactive compounds. These compounds can be harnessed for their medicinal properties, contributing to the development of new drugs and therapeutic agents. Overall, Paraburkholderia madseniana exemplifies the versatility of microorganisms in addressing environmental challenges and advancing industrial processes through its unique metabolic capabilities.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	openchat/openchat-7b	google/gemma-7b-it	mistralai/mistral-7b-instruct	google/gemini-pro-1.5	google/gemini-pro-1.5	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	false ✗	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	true	false	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 3 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	N/A	true	true	true	false	false	false	false	true	true	true	false	false	false	false	false	false	false	false	false	false	true	true	true	true	true	true	true	true
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	gamma ✓	beta ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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