Yersinia canariae

General Information

Yersinia canariae is a recently identified species within the genus Yersinia, which is known for containing several pathogenic species, including Yersinia pestis, the causative agent of plague. What makes Yersinia canariae particularly interesting is its unique ecological niche and potential implications for understanding microbial diversity and evolution. This species was first isolated from the cloaca of a canary, indicating a possible avian association that could provide insights into host-microbe interactions in birds. From a research perspective, Yersinia canariae offers a valuable opportunity to study the genetic and phenotypic traits that differentiate it from other Yersinia species. Its genome may reveal novel genes and metabolic pathways that contribute to its survival and adaptation in avian hosts. Additionally, understanding its role in the microbiome of birds could have broader implications for avian health and disease. Another intriguing aspect of Yersinia canariae is its potential for horizontal gene transfer, a common phenomenon in the Yersinia genus that can lead to the acquisition of new virulence factors or antibiotic resistance genes. Studying this species could therefore provide important insights into the mechanisms of genetic exchange and evolution within the genus. In summary, Yersinia canariae is a noteworthy species due to its unique host association, potential for novel genetic discoveries, and its role in the broader context of microbial ecology and evolution.**

Yersinia canariae is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential implications in both environmental and clinical microbiology. This species was first isolated from the feces of wild birds in the Canary Islands, highlighting its role in the avian microbiome and its adaptation to a specific habitat. Its association with birds suggests a potential for studying host-pathogen interactions in wildlife, which can provide insights into zoonotic diseases. One of the most interesting aspects of Yersinia canariae is its genetic diversity, which may offer clues about evolutionary processes in bacteria that inhabit diverse environments. The genomic analysis of this species reveals unique genetic markers that differentiate it from other members of the Yersinia genus, particularly Yersinia pestis, the causative agent of plague. This distinction is crucial for understanding the evolutionary pathways and adaptations that have allowed Yersinia canariae to thrive in its specific ecological niche. Furthermore, Yersinia canariae has been studied for its metabolic capabilities, particularly its ability to utilize various carbon sources, which may contribute to its survival in different environments. This metabolic versatility makes it a valuable organism for research in microbial ecology and biogeochemistry, as it can provide insights into nutrient cycling in avian habitats. In summary, Yersinia canariae stands out not only for its unique ecological associations but also for its potential contributions to our understanding of microbial diversity, evolution, and environmental interactions. Its study could pave the way for new discoveries in both environmental science and public health.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Enterobacterales

Family: Yersiniaceae

Genus: Yersinia

Species: Yersinia canariae

NCBI ID

2607663

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/831/415/GCF_009831415.1_ASM983141v1

File for sequence-based predictions:
GCF_009831415.1_ASM983141v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Yersinia canariae is a member of the Yersinia genus, which includes several species known for their clinical significance. While Yersinia canariae is less studied compared to its relatives, such as Yersinia pestis (the causative agent of plague) and Yersinia enterocolitica (associated with gastrointestinal infections), it has been isolated from various environmental sources and animal hosts. Its clinical implications are still being explored, but there are several key areas of interest: 1. Potential Pathogenicity: Although Yersinia canariae has not been definitively linked to human disease, its close relation to pathogenic Yersinia species raises concerns about its potential to cause infections in humans, particularly in immunocompromised individuals. 2. Role in Human Health: The organism may play a role in the microbiome of certain animal hosts, and its interactions with these hosts could provide insights into its ecological and potential pathogenic roles. 3. Antimicrobial Resistance: Like many bacteria, there is a possibility that Yersinia canariae could harbor antimicrobial resistance genes, which could complicate treatment options if it were to emerge as a human pathogen. 4. Immune Evasion Strategies: Yersinia species are known for their ability to evade the immune response through various mechanisms, including the secretion of virulence factors. Understanding these strategies in Yersinia canariae could provide insights into its pathogenic potential. 5. Research and Surveillance: Continued research and surveillance are necessary to monitor Yersinia canariae for any emerging clinical significance, especially in the context of zoonotic transmission and potential outbreaks. In summary, while Yersinia canariae is not currently recognized as a significant human pathogen, its relationship with other Yersinia species and its potential for pathogenicity warrant further investigation to fully understand its clinical implications.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Yersinia canariae is a bacterium that has been primarily associated with the marine environments of the Canary Islands. This organism thrives in coastal ecosystems, particularly in areas where it can interact with both marine fauna and flora. Its presence is often linked to the microbial communities found in these habitats, where it plays a significant role in nutrient cycling and organic matter decomposition. In these marine biomes, Yersinia canariae can be found in association with various benthic organisms, contributing to the overall health of the ecosystem. It is known to engage in symbiotic relationships with certain marine invertebrates, aiding in their digestion and nutrient absorption. This interaction highlights its importance in the food web, as it helps facilitate energy transfer between different trophic levels. Additionally, Yersinia canariae exhibits remarkable environmental adaptations that allow it to survive in fluctuating salinity and temperature conditions typical of coastal waters. Its ability to withstand these variations underscores its resilience and ecological significance in maintaining the balance of microbial life in these marine habitats. Overall, Yersinia canariae is a key player in the marine ecosystems of the Canary Islands, contributing to both the biodiversity and the functional dynamics of these unique environments.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Yersinia canariae has shown potential in various industrial applications, particularly in the fields of biotechnology and waste management. This organism is known for its ability to thrive in diverse environments, which can be harnessed for specific processes. In biotechnology, Yersinia canariae can be utilized in fermentation processes, where it may contribute to the production of valuable metabolites. Its metabolic pathways can be explored for the synthesis of organic compounds, which can be beneficial in the development of bio-based products. In the realm of waste management, Yersinia canariae has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic materials. This property can be leveraged in the treatment of wastewater, where the organism can help in the degradation of pollutants, thus improving water quality and reducing environmental impact. Furthermore, the enzymatic activities of Yersinia canariae may be explored for pharmaceutical development, where specific enzymes produced by the organism could be utilized in drug synthesis or as biocatalysts in various chemical reactions. This highlights the potential of Yersinia canariae in contributing to sustainable practices across multiple industries, making it a valuable organism for future research and application.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	google/gemini-flash-1.5	google/gemini-flash-1.5	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	openchat/openchat-7b	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	facultatively anaerobic ✗	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	TRUE	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	false	false	true	true	true	true
Animal pathogenicity	TRUE	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓
Biosafety level	N/A	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 1	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2
Health association	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true
Host association	N/A	false	false	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	beta	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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