Streptomyces nymphaeiformis

General Information

Streptomyces nymphaeiformis is a fascinating microorganism belonging to the genus Streptomyces, which is renowned for its prolific production of secondary metabolites. One of the most intriguing aspects of S. nymphaeiformis is its ability to produce a wide array of bioactive compounds, including antibiotics, antifungals, and antitumor agents. This makes it a valuable subject of study in pharmaceutical research and biotechnology. The genus Streptomyces is well-known for its complex life cycle and filamentous growth, which resembles that of fungi. S. nymphaeiformis forms a dense network of mycelium and produces spores that are critical for its reproduction and dissemination. Another unique feature of S. nymphaeiformis is its potential for bioremediation. It has been observed to degrade various environmental pollutants, making it a candidate for cleaning up contaminated sites. This ability is attributed to its diverse enzymatic repertoire, which can break down complex organic compounds. In addition to its environmental and pharmaceutical applications, S. nymphaeiformis is also of interest due to its genetic and metabolic diversity. Researchers are keen on exploring its genome to uncover novel genes and pathways that could lead to the discovery of new drugs and industrial enzymes. Overall, Streptomyces nymphaeiformis stands out as a microorganism of significant scientific interest due to its multifaceted applications in medicine, environmental science, and industrial biotechnology.

Streptomyces nymphaeiformis is a fascinating actinobacterium known for its unique ecological niche and potential biotechnological applications. This species is primarily isolated from freshwater environments, particularly associated with aquatic plants, which highlights its role in the aquatic ecosystem. What makes S. nymphaeiformis particularly interesting is its ability to produce a variety of bioactive compounds, including antibiotics and antifungal agents. These secondary metabolites are of great interest in pharmaceutical research, as they may lead to the development of new drugs to combat resistant strains of bacteria and fungi. The organism exhibits a filamentous growth form typical of the Streptomyces genus, which allows it to efficiently colonize substrates in its environment. Its genetic diversity and adaptability to different ecological conditions make it a valuable model for studying microbial interactions in freshwater ecosystems. Furthermore, the potential for bioremediation applications is significant, as S. nymphaeiformis may possess the ability to degrade pollutants in aquatic environments, contributing to environmental sustainability efforts. In summary, Streptomyces nymphaeiformis stands out not only for its ecological significance but also for its promising applications in medicine and environmental science, making it a subject of ongoing research interest.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Kitasatosporales

Family: Streptomycetaceae

Genus: Streptomyces

Species: Streptomyces nymphaeiformis

NCBI ID

2663842

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/203/895/GCA_014203895.1_ASM1420389v1

File for sequence-based predictions:
GCA_014203895.1_ASM1420389v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Streptomyces nymphaeiformis is a member of the genus Streptomyces, which is known for its significant role in the production of antibiotics and other bioactive compounds. While S. nymphaeiformis itself is not commonly associated with human disease, its relatives have been implicated in various clinical contexts. The genus is renowned for its ability to produce over two-thirds of the naturally derived antibiotics used in clinical settings, including streptomycin and tetracycline. This highlights the potential of S. nymphaeiformis in pharmaceutical applications, particularly in the development of new antimicrobial agents. In terms of pathogenicity, members of the Streptomyces genus are generally considered non-pathogenic to humans; however, they can occasionally be involved in opportunistic infections, particularly in immunocompromised individuals. The ability of some Streptomyces species to produce a variety of secondary metabolites may also contribute to their role in immune evasion, although specific mechanisms for S. nymphaeiformis are not well-documented. Furthermore, the potential for antimicrobial resistance is a critical area of concern, as the overuse of antibiotics derived from Streptomyces can lead to the emergence of resistant strains. This underscores the importance of ongoing research into the resistance mechanisms associated with this genus. In summary, while Streptomyces nymphaeiformis may not have direct clinical implications as a pathogen, its contributions to antibiotic production and the broader implications of its relatives in human health and disease make it a significant organism in microbiological and pharmaceutical research.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Streptomyces nymphaeiformis has shown significant potential in various industrial applications due to its unique metabolic capabilities. One of the primary areas of interest is in biotechnology, where Streptomyces nymphaeiformis is known for its ability to produce a range of bioactive compounds, including antibiotics and enzymes. This makes it a valuable organism in the development of new pharmaceuticals, particularly in the production of novel antimicrobial agents through fermentation processes. In the realm of waste management, Streptomyces nymphaeiformis has demonstrated effective biodegradation capabilities, particularly in the breakdown of complex organic pollutants. This property can be harnessed in bioremediation strategies to clean up contaminated environments, such as soil and water, by utilizing its enzymatic activity to degrade harmful substances. Furthermore, the organism's role in biofuel production is noteworthy. It can contribute to the conversion of biomass into biofuels through fermentation processes, where it helps in the breakdown of lignocellulosic materials, thus enhancing the yield of bioethanol and other biofuels. Overall, Streptomyces nymphaeiformis stands out as a versatile microorganism with promising applications in pharmaceutical development, waste treatment, and bioenergy, making it a subject of interest for ongoing research and industrial exploitation.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-flash-1.5	google/gemini-pro-1.5	google/gemini-pro	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	FALSE	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 3 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 3 ✗	biosafety level 3 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	true	true	true	true	false	true	false	false	true	true	false	false	false	false	true	true	true	true	false	false	false	false	true	true	false	false
Host association	FALSE	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	tail	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗

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