Advenella incenata

General Information

Advenella incenata is a fascinating microorganism that has garnered attention due to its unique metabolic capabilities and potential applications in biotechnology. One of the most noteworthy characteristics of A. incenata is its ability to degrade a variety of complex organic compounds, including some that are considered environmental pollutants. This makes it a valuable candidate for bioremediation efforts, where it can be employed to clean up contaminated environments. Another interesting aspect of A. incenata is its role in the nitrogen cycle. It has been observed to participate in the denitrification process, converting nitrates into nitrogen gas, which is a crucial step in reducing nitrogen pollution in aquatic systems. This ability highlights its ecological importance and potential utility in managing agricultural runoff and wastewater treatment. From a research perspective, A. incenata is also intriguing due to its genetic and enzymatic diversity. Studies have shown that it possesses a variety of enzymes that can break down complex molecules, which could be harnessed for industrial applications such as the production of biofuels or the synthesis of valuable chemicals. In summary, Advenella incenata stands out due to its biodegradation capabilities, its role in the nitrogen cycle, and its potential for biotechnological applications. These characteristics make it a subject of ongoing research with promising implications for environmental and industrial processes.

Advenella incenata is a fascinating bacterium that belongs to the family of Comamonadaceae. This organism is particularly interesting due to its ability to thrive in extreme environments, specifically in soils contaminated with hydrocarbons. Its unique metabolic capabilities allow it to degrade a variety of organic pollutants, making it a valuable candidate for bioremediation efforts. This characteristic not only highlights its ecological importance but also positions it as a potential tool in environmental cleanup strategies. One of the remarkable features of Advenella incenata is its capacity to utilize a range of carbon sources, which contributes to its adaptability in diverse habitats. This metabolic versatility is a subject of interest for researchers studying microbial ecology and the mechanisms of biodegradation. Understanding how this bacterium processes complex organic compounds can provide insights into microbial interactions in contaminated environments. Furthermore, Advenella incenata has been studied for its potential applications in biotechnology, particularly in the development of biofilters and bioreactors designed to treat wastewater and industrial effluents. The organism's resilience and efficiency in breaking down pollutants underscore its significance in sustainable practices and environmental management. Overall, Advenella incenata exemplifies the intersection of microbiology and environmental science, making it a noteworthy subject for ongoing research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Alcaligenaceae

Genus: Advenella

Species: Advenella incenata

NCBI ID

267800

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/004/217/095/GCF_004217095.1_ASM421709v1

File for sequence-based predictions:
GCF_004217095.1_ASM421709v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Advenella incenata is a Gram-negative bacterium that has been isolated from various environmental sources, including soil and water. While it is not commonly associated with human disease, its clinical relevance has emerged in specific contexts. Advenella incenata has been identified in cases of infections in immunocompromised patients, particularly those with underlying health conditions or those undergoing invasive procedures. This organism is notable for its potential role in nosocomial infections, where it may be acquired in healthcare settings, particularly in patients with prolonged hospital stays or those with indwelling medical devices. One of the significant concerns regarding Advenella incenata is its antimicrobial resistance. Reports indicate that this bacterium can exhibit resistance to multiple classes of antibiotics, which complicates treatment options for infections it may cause. The mechanisms of resistance are not fully understood, but they may involve the production of beta-lactamases or other enzymatic modifications that inactivate antibiotics. In terms of immune evasion, Advenella incenata may possess strategies that allow it to survive in the host environment, although specific mechanisms have not been extensively characterized. Its ability to persist in various environments suggests a level of adaptability that could contribute to its pathogenic potential in susceptible populations. Currently, there are no known medical applications of Advenella incenata as a probiotic or therapeutic agent, and its role in human health remains largely under investigation. However, continued surveillance and research are essential to better understand its clinical implications and to develop effective strategies for managing infections associated with this organism.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Advenella incenata is a bacterium commonly associated with soil environments and wastewater treatment systems. This microorganism thrives in aerobic conditions, where it plays a crucial role in the degradation of organic matter. Its ability to metabolize various compounds makes it an important player in the biogeochemical cycles of carbon and nitrogen, contributing to soil fertility and nutrient cycling. In wastewater treatment plants, Advenella incenata is often found in activated sludge systems, where it aids in the breakdown of pollutants, thus enhancing the efficiency of the treatment process. This bacterium exhibits symbiotic relationships with other microorganisms, facilitating a diverse microbial community that is essential for maintaining the health of the ecosystem. Additionally, Advenella incenata demonstrates remarkable environmental adaptability, allowing it to survive in varying conditions, including fluctuations in temperature and pH levels. Its presence in contaminated sites highlights its potential for bioremediation, where it can assist in the detoxification of hazardous substances, further emphasizing its ecological significance.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Advenella incenata has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and biofuel production. This organism is known for its ability to thrive in environments rich in organic compounds, making it a candidate for biodegradation processes. In waste management, Advenella incenata can be utilized to break down complex organic materials, contributing to the treatment of wastewater and the reduction of pollutants. Its enzymatic activity allows it to degrade various contaminants, which is crucial for maintaining environmental health. In the realm of biofuel production, Advenella incenata can be involved in fermentation processes that convert organic substrates into biofuels. This capability is particularly valuable in the production of bioethanol, where the microorganism can ferment sugars derived from agricultural waste, thus promoting sustainable energy solutions. Additionally, there is potential for Advenella incenata in pharmaceutical development, where its metabolic pathways may be explored for the production of bioactive compounds. The organism's unique enzymatic profiles could lead to the discovery of novel drugs or therapeutic agents. Overall, Advenella incenata represents a versatile microorganism with significant promise across multiple industries.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	openai/gpt-4o	openai/gpt-4o	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	google/gemma-7b-it	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain positive ✗	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	anaerobic ✗	anaerobic ✗	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	false	false	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	false	false
Animal pathogenicity	N/A	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false
Biosafety level	biosafety level 2	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 2 ✓	biosafety level 2 ✓	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗	biosafety level 1 ✗
Health association	N/A	false	false	true	true	true	true	false	false	false	false	false	true	true	false	false	false	false	false	false	true	true	true	true	true	true	false	false
Host association	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	gamma ✓	alpha ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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