Pseudomonas bijieensis

General Information

Pseudomonas bijieensis is a fascinating bacterium belonging to the genus Pseudomonas, which is renowned for its metabolic diversity and ecological versatility. This particular species was first isolated from a soil sample in Bijie, China, which is reflected in its name. One of the most intriguing aspects of Pseudomonas bijieensis is its potential for bioremediation. Like many of its relatives, it has shown the ability to degrade various environmental pollutants, making it a valuable candidate for cleaning up contaminated sites. Another noteworthy characteristic of Pseudomonas bijieensis is its production of secondary metabolites. These compounds can have antimicrobial properties, which opens up possibilities for developing new antibiotics or antifungal agents. The study of these metabolites can also provide insights into the complex chemical interactions that occur in microbial communities. From a genetic perspective, Pseudomonas bijieensis offers a rich field of study due to its large and versatile genome. Researchers are particularly interested in the genes responsible for its metabolic pathways and environmental adaptability. Understanding these genetic components can lead to advancements in synthetic biology, where engineered strains could be designed for specific industrial or environmental applications. In summary, Pseudomonas bijieensis stands out due to its bioremediation potential, production of bioactive compounds, and genetic versatility. These attributes make it a valuable subject for ongoing research in environmental science, biotechnology, and microbial ecology.

Pseudomonas bijieensis is a fascinating bacterium that was first isolated from a soil sample in Bijie, Guizhou Province, China. This organism is particularly interesting due to its remarkable metabolic versatility, which allows it to thrive in a variety of environments, including those contaminated with pollutants. Its ability to degrade a wide range of organic compounds makes it a valuable candidate for bioremediation efforts, particularly in the cleanup of hazardous waste sites. One of the unique features of Pseudomonas bijieensis is its capacity to utilize aromatic compounds as carbon sources, which is a trait shared by many members of the Pseudomonas genus but is particularly pronounced in this species. This characteristic not only highlights its potential in environmental applications but also makes it a subject of interest in studies related to microbial metabolism and enzymatic pathways. Additionally, Pseudomonas bijieensis has been noted for its antimicrobial properties, which could have implications for developing new antibiotics or biocontrol agents in agriculture. The organism's genetic makeup and metabolic pathways are still being explored, providing a rich area for future research that could lead to novel applications in biotechnology and environmental science. Overall, Pseudomonas bijieensis stands out as a promising organism for both ecological and industrial applications, making it a significant focus for ongoing microbiological studies.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas bijieensis

NCBI ID

2681983

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/023/330/585/GCA_023330585.1_ASM2333058v1

File for sequence-based predictions:
GCA_023330585.1_ASM2333058v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas bijieensis is a member of the Pseudomonas genus, which is known for its environmental versatility and clinical significance. While specific studies on Pseudomonas bijieensis are limited, its close relatives, particularly Pseudomonas aeruginosa, provide insight into potential clinical implications. This genus is often associated with opportunistic infections, particularly in immunocompromised patients, and can lead to pneumonia, sepsis, and wound infections. The pathogenicity of Pseudomonas species is attributed to their ability to form biofilms, produce a variety of virulence factors, and evade the immune response through mechanisms such as the secretion of exoenzymes and toxins. Furthermore, Pseudomonas species are notorious for their antimicrobial resistance, often exhibiting resistance to multiple classes of antibiotics, which complicates treatment options. This resistance is primarily due to the presence of efflux pumps, enzymatic degradation of antibiotics, and mutations in target sites. The emergence of multidrug-resistant strains poses a significant challenge in clinical settings, particularly in patients with chronic conditions or those undergoing invasive procedures. In terms of medical applications, while Pseudomonas bijieensis itself may not be directly utilized, the broader Pseudomonas genus has been explored for potential therapeutic uses, including the development of probiotics and bioremediation strategies. Understanding the ecological role and pathogenic potential of Pseudomonas bijieensis could provide valuable insights into its interactions with human health and disease, particularly in the context of emerging infections and resistance patterns.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas bijieensis is a versatile bacterium commonly found in a variety of habitat types that reflect its ecological adaptability. This microorganism thrives in soil ecosystems, particularly in regions with high organic matter content, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its presence in these environments contributes to the overall health of the soil by enhancing nutrient availability and promoting plant growth through its ability to solubilize phosphorus and other essential nutrients. In addition to terrestrial habitats, Pseudomonas bijieensis is also associated with aquatic environments, including freshwater systems. Here, it can be found in sediments and water columns, where it participates in the degradation of organic pollutants, thus playing a significant role in bioremediation processes. This bacterium exhibits a remarkable ability to adapt to varying levels of pollution, making it a valuable organism for environmental cleanup efforts. Furthermore, Pseudomonas bijieensis engages in symbiotic relationships with plants, enhancing their resistance to pathogens and stress conditions. This interaction not only benefits the plants but also supports the overall biodiversity of the ecosystem by fostering a healthy plant community. Overall, Pseudomonas bijieensis exemplifies the intricate connections within ecosystems, showcasing its importance in nutrient cycling, pollution degradation, and plant health, thereby contributing to the stability and resilience of the biomes it inhabits.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas bijieensis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Pseudomonas bijieensis is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are valuable in the production of biofuels, as they can facilitate the breakdown of complex organic materials into simpler compounds that can be fermented into ethanol or other biofuels. In the realm of waste management, Pseudomonas bijieensis has demonstrated capabilities in biodegradation, particularly in the breakdown of pollutants and toxic compounds in contaminated environments. This makes it a candidate for use in bioremediation strategies, where it can help restore polluted sites by degrading harmful substances into less toxic forms. Furthermore, the organism's metabolic versatility allows it to thrive in diverse environments, making it suitable for pharmaceutical development. Its ability to produce secondary metabolites can be explored for the development of new drugs or therapeutic agents. Overall, Pseudomonas bijieensis exemplifies the potential of microorganisms in advancing sustainable practices across various industries, particularly through its roles in fermentation, enzyme production, and waste treatment.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemini-flash-1.5	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	false	true	false	false	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true
Host association	TRUE	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Plant pathogenicity	TRUE	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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