Pseudomonas izuensis

General Information

Pseudomonas izuensis is a fascinating microorganism within the genus Pseudomonas, known for its diverse metabolic capabilities and environmental adaptability. One of the most intriguing aspects of P. izuensis is its ability to degrade a wide range of organic compounds, making it a valuable candidate for bioremediation efforts. This species has been isolated from various environments, including soil and water, where it plays a crucial role in the breakdown of pollutants. Another noteworthy characteristic of P. izuensis is its production of secondary metabolites, which can have antimicrobial properties. This makes it a subject of interest for the development of new antibiotics and other pharmaceutical agents. The metabolic versatility of P. izuensis also extends to its ability to participate in nitrogen fixation, contributing to soil fertility and plant growth. From a research perspective, P. izuensis is valuable due to its genetic tractability. Scientists can manipulate its genome to study gene function and regulation, which can provide insights into bacterial physiology and the mechanisms underlying its metabolic processes. Additionally, the organism's ability to form symbiotic relationships with plants opens up avenues for agricultural applications, such as promoting plant health and growth. In summary, Pseudomonas izuensis stands out due to its bioremediation potential, antimicrobial compound production, and genetic tractability, making it a significant organism for environmental, pharmaceutical, and agricultural research.

Pseudomonas izuensis is a fascinating bacterium that was first isolated from a hot spring in Japan, specifically on Izu Peninsula, which highlights its unique adaptation to extreme environments. This organism is part of the diverse genus Pseudomonas, known for its metabolic versatility and ability to thrive in various ecological niches. One of the most interesting aspects of Pseudomonas izuensis is its potential for bioremediation, as it has shown capabilities to degrade various pollutants, including hydrocarbons and other organic compounds, making it a valuable candidate for environmental cleanup efforts. Additionally, Pseudomonas izuensis possesses unique enzymatic pathways that allow it to utilize a wide range of carbon sources, which is a hallmark of the Pseudomonas genus. This metabolic flexibility not only contributes to its survival in diverse habitats but also makes it a subject of interest in studies related to microbial ecology and biotechnology. Furthermore, the organism's ability to produce secondary metabolites may have implications in pharmaceutical research, as these compounds can exhibit antimicrobial properties. The exploration of Pseudomonas izuensis could lead to the discovery of novel bioactive compounds, which could be harnessed for therapeutic applications. Overall, the unique environmental adaptations and metabolic capabilities of Pseudomonas izuensis make it a significant organism for both ecological and biotechnological research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas izuensis

NCBI ID

2684212

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/356/535/GCF_002356535.2_ASM235653v2

File for sequence-based predictions:
GCF_002356535.2_ASM235653v2_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas izuensis is a member of the Pseudomonas genus, which is known for its environmental versatility and clinical significance. This bacterium has been isolated from various environments, including soil and water, and has been associated with human infections, particularly in immunocompromised individuals. Clinical implications of Pseudomonas izuensis include its potential role in nosocomial infections, where it can cause pneumonia, wound infections, and bacteremia. Its pathogenicity is attributed to its ability to form biofilms and produce a variety of virulence factors, which enhance its survival in hostile environments and contribute to its immune evasion strategies. Moreover, Pseudomonas izuensis exhibits antimicrobial resistance, a characteristic common among Pseudomonas species. This resistance can complicate treatment options, as it may show resistance to multiple classes of antibiotics, including beta-lactams and aminoglycosides. The presence of such resistance mechanisms poses a significant challenge in clinical settings, particularly in patients with underlying health conditions. While Pseudomonas izuensis is not as widely studied as other Pseudomonas species, its potential to cause infections and its resistance patterns underscore the importance of ongoing surveillance and research. Understanding its role in human health and disease is crucial for developing effective treatment strategies and managing infections associated with this organism.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas izuensis is a versatile bacterium commonly found in various aquatic environments and soil ecosystems. This microorganism thrives particularly well in marine habitats, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its ability to degrade a wide range of organic compounds makes it an important player in the biodegradation processes within these ecosystems. In freshwater environments, Pseudomonas izuensis contributes to the health of aquatic ecosystems by participating in the breakdown of pollutants and organic waste, thus maintaining water quality. This bacterium is often associated with biofilms, which are complex communities of microorganisms that adhere to surfaces in aquatic systems. These biofilms can enhance nutrient availability and provide a habitat for other microorganisms, showcasing the symbiotic relationships that Pseudomonas izuensis can form with its surroundings. Additionally, Pseudomonas izuensis exhibits remarkable environmental adaptability, allowing it to survive in varying conditions, including changes in salinity and temperature. This adaptability not only aids in its survival but also enhances its role in ecosystem resilience, particularly in the face of environmental stressors. Overall, Pseudomonas izuensis is a key organism in maintaining the balance and health of its associated biomes, demonstrating the intricate connections within microbial communities.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas izuensis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where Pseudomonas izuensis is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are valuable in the production of biofuels, as they can facilitate the breakdown of complex organic materials into simpler compounds that can be fermented into ethanol or other biofuels. In the realm of waste management, Pseudomonas izuensis has demonstrated capabilities in biodegradation, particularly in the breakdown of pollutants such as hydrocarbons and heavy metals. This makes it a candidate for use in bioremediation strategies aimed at cleaning up contaminated environments, such as oil spills or industrial waste sites. Furthermore, the organism has potential applications in pharmaceutical development. Its metabolic pathways can be exploited for the production of bioactive compounds, which may lead to the discovery of new drugs or therapeutic agents. The ability of Pseudomonas izuensis to produce secondary metabolites can be particularly useful in this context. Overall, the versatility of Pseudomonas izuensis in processes such as fermentation, enzyme production, and waste treatment highlights its importance in advancing sustainable industrial practices and developing innovative solutions across multiple sectors.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	google/gemma-7b-it	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	true	true	true	true	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	true	true	false	false	false	false	true	true
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	true	true	true	true	false	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false	false	false	true	true
Host association	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	alpha ✗	alpha ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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