Roseomonas harenae

General Information

Roseomonas harenae is a fascinating microorganism belonging to the genus Roseomonas. This bacterium is particularly interesting due to its unique pigmentation, which ranges from pink to red, a characteristic feature of many Roseomonas species. The pigmentation is not just for show; it often indicates the presence of carotenoid compounds, which can have antioxidant properties and potential applications in biotechnology and medicine. Another notable aspect of R. harenae is its environmental adaptability. It was originally isolated from sandy soil, which suggests it has mechanisms to survive in relatively harsh, nutrient-poor environments. This adaptability makes it a subject of interest for studies on microbial ecology and soil health. From a research perspective, Roseomonas harenae is valuable due to its potential bioremediation capabilities. Members of the Roseomonas genus have been studied for their ability to degrade pollutants and heavy metals, making them candidates for cleaning up contaminated environments. Additionally, the genus is known for its antimicrobial properties, which could be harnessed for developing new antibiotics or antifungal agents. In summary, Roseomonas harenae stands out due to its striking pigmentation, environmental resilience, and potential applications in bioremediation and antimicrobial research. These characteristics make it a valuable organism for further scientific exploration.

Roseomonas harenae is a fascinating member of the genus Roseomonas, which is known for its unique pink pigmentation due to the presence of carotenoid pigments. This characteristic not only makes it visually distinctive but also suggests potential roles in photoprotection and antioxidant activity. Isolated from marine environments, R. harenae thrives in sandy substrates, showcasing its adaptability to specific ecological niches. One of the most interesting aspects of R. harenae is its potential biotechnological applications. The organism has been studied for its ability to produce various bioactive compounds, which could be valuable in pharmaceuticals and cosmetics. The metabolic pathways of R. harenae are of particular interest, as they may lead to the discovery of novel enzymes or metabolites that can be harnessed for industrial purposes. Additionally, R. harenae contributes to our understanding of microbial diversity in marine ecosystems. Its presence in sandy habitats highlights the importance of studying less-explored environments, which are often rich in unique microbial life. Research on R. harenae can provide insights into microbial interactions and the ecological roles of bacteria in coastal ecosystems, making it a valuable organism for environmental microbiology studies.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Alphaproteobacteria

Order: Rhodospirillales

Family: Acetobacteraceae

Genus: Roseomonas

Species: Roseomonas harenae

NCBI ID

2692566

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/848/505/GCF_009848505.1_ASM984850v1

File for sequence-based predictions:
GCF_009848505.1_ASM984850v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Roseomonas harenae is a gram-negative, non-spore-forming bacterium that has been isolated from various environmental sources, including sand and soil. Its clinical relevance has emerged primarily due to its association with infections in immunocompromised patients. Notably, R. harenae has been implicated in cases of bacteremia and endocarditis, highlighting its potential as an opportunistic pathogen. Infections caused by this organism are rare but can be severe, particularly in individuals with underlying health conditions or those undergoing invasive procedures. One of the significant concerns regarding R. harenae is its potential for antimicrobial resistance. Reports indicate that this organism may exhibit resistance to multiple classes of antibiotics, complicating treatment options for affected patients. The mechanisms of resistance are not fully understood, but they underscore the importance of careful antibiotic stewardship and susceptibility testing in clinical settings. In terms of immune evasion, R. harenae may employ strategies that allow it to persist in the host despite the presence of an active immune response. This characteristic is particularly concerning in the context of nosocomial infections, where the bacterium can be introduced into sterile environments, leading to outbreaks in healthcare settings. While R. harenae is not commonly associated with probiotic applications or vaccines, its role in the human microbiome and potential interactions with other microbial communities warrant further investigation. Understanding its ecological niche and pathogenic potential could provide insights into its behavior in both health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Roseomonas harenae is a species of bacteria that is primarily associated with marine environments and coastal ecosystems. This microorganism thrives in sandy substrates and is often found in intertidal zones, where it plays a significant role in the microbial community. Its presence is particularly noted in areas with high organic matter, contributing to the breakdown of organic materials and nutrient cycling within the ecosystem. In these coastal habitats, R. harenae exhibits important interactions with other microorganisms, forming part of the complex food web. It can engage in symbiotic relationships with various marine organisms, aiding in nutrient acquisition and enhancing the overall health of the ecosystem. Additionally, this bacterium is known for its ability to adapt to varying salinity levels, showcasing its resilience in fluctuating environmental conditions. Overall, Roseomonas harenae is a vital component of its biome, contributing to the ecological balance and functioning of marine ecosystems, particularly in sandy coastal areas.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Roseomonas harenae has shown potential in various industrial applications due to its unique metabolic capabilities. One of the notable areas is biotechnology, where Roseomonas harenae can be utilized in fermentation processes to produce valuable metabolites. This organism is known for its ability to degrade complex organic compounds, making it a candidate for waste management solutions, particularly in the treatment of wastewater and the biodegradation of pollutants. In the realm of biofuel production, Roseomonas harenae may play a role in the conversion of biomass into biofuels through its metabolic pathways that facilitate the breakdown of lignocellulosic materials. This process can enhance the efficiency of biofuel generation, contributing to more sustainable energy sources. Furthermore, the organism's enzymatic activity is of interest in pharmaceutical development, where it could be harnessed for the production of enzymes that are crucial in drug synthesis or as biocatalysts in various chemical reactions. The potential for Roseomonas harenae to contribute to these industries highlights its significance in advancing sustainable practices and innovative solutions in biotechnology and environmental management.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/gemini-pro	google/gemini-pro
Motility	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	true	false	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	true	true	true	false	true	false	false	true	true	true	true	false	false	true	true	false	false	true	true	false	false	true	true	false	false	true	true
Host association	N/A	false	false	true	true	false	false	true	false	false	true	true	true	true	false	false	true	true	false	false	true	true	false	false	true	true	true	true	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	coccus ✗	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	coccus ✗	coccus ✗	coccus ✗	coccus ✗	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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