Caulobacter soli

General Information

Caulobacter soli is a fascinating microorganism that belongs to the genus Caulobacter. This genus is well-known for its distinctive life cycle, which includes a stalked, sessile phase and a motile, swarmer phase. One of the most intriguing aspects of Caulobacter soli is its ability to thrive in soil environments, which suggests it plays a significant role in soil ecology and nutrient cycling. Caulobacter species are often studied for their unique cell division and differentiation processes. The stalked cells adhere to surfaces via a holdfast, a specialized structure that provides strong attachment, which is particularly interesting for studies on bioadhesion and surface colonization. Moreover, Caulobacter soli can be valuable in bioremediation research due to its potential to degrade various organic compounds found in soil. This makes it a candidate for cleaning up contaminated environments. In addition to its ecological importance, the genus Caulobacter is a model organism for studying cellular differentiation and development, making Caulobacter soli a subject of interest for microbiologists and cell biologists alike. The insights gained from studying this organism can contribute to a broader understanding of bacterial life cycles and environmental interactions.

Caulobacter soli is a fascinating bacterium that belongs to the genus Caulobacter, known for its unique life cycle and morphological characteristics. This organism is particularly interesting due to its stalked structure, which allows it to anchor itself to surfaces in aquatic environments. The stalk is a distinctive feature that aids in nutrient absorption and provides stability in fluctuating conditions. One of the most remarkable aspects of C. soli is its ability to thrive in oligotrophic environments, where nutrients are scarce. This adaptability makes it a valuable model organism for studying nutrient acquisition and survival strategies in low-nutrient conditions. Researchers are particularly interested in its metabolic pathways, which can provide insights into how microorganisms adapt to extreme environments. Additionally, C. soli exhibits a unique asymmetric cell division process, resulting in a motile swarmer cell and a sessile stalked cell. This division strategy is not only intriguing from a developmental biology perspective but also offers potential applications in biotechnology, particularly in bioengineering and synthetic biology. Furthermore, C. soli has been studied for its role in biogeochemical cycles, especially in freshwater ecosystems. Its interactions with other microorganisms and its impact on nutrient cycling make it a key player in understanding ecosystem dynamics. The organism's ability to form symbiotic relationships with other species adds another layer of complexity to its ecological significance. In summary, Caulobacter soli stands out due to its unique morphological features, adaptability to nutrient-poor environments, and its role in ecological processes, making it a valuable subject for research in microbiology and environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Alphaproteobacteria

Order: Caulobacterales

Family: Caulobacteraceae

Genus: Caulobacter

Species: Caulobacter soli

NCBI ID

2708539

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/011/045/195/GCA_011045195.1_ASM1104519v1

File for sequence-based predictions:
GCA_011045195.1_ASM1104519v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Caulobacter soli is a gram-negative bacterium primarily found in soil and aquatic environments. While it is not traditionally associated with human disease, its clinical relevance is emerging due to its potential role in environmental microbiology and bioremediation. Research indicates that Caulobacter soli may contribute to nutrient cycling and the degradation of pollutants, which can indirectly affect human health by influencing the quality of water and soil. In terms of pathogenicity, there is limited documentation of Caulobacter soli causing infections in humans. However, its close relatives in the Caulobacter genus have been studied for their ability to form biofilms, which can be problematic in clinical settings, particularly in medical device-related infections. Furthermore, the organism's ability to adapt to various environmental conditions raises questions about its antimicrobial resistance mechanisms. While specific resistance profiles for Caulobacter soli are not well-characterized, the presence of resistance genes in related species suggests a potential for horizontal gene transfer and the development of resistance traits. Overall, while Caulobacter soli is not a known pathogen, its ecological roles and potential interactions with human health warrant further investigation, particularly in the context of environmental health and microbial ecology.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Caulobacter soli is a fascinating microorganism primarily associated with freshwater environments and soil ecosystems. This bacterium thrives in nutrient-rich habitats, often found in the rhizosphere of plants, where it plays a crucial role in nutrient cycling and soil health. Its presence is particularly notable in areas with high organic matter, as it contributes to the breakdown of complex organic compounds, thus facilitating nutrient availability for other organisms in the ecosystem. In the soil biome, Caulobacter soli exhibits a unique ecological niche by forming symbiotic relationships with plant roots. This interaction not only aids in the plant's nutrient uptake but also enhances the soil structure, promoting better water retention and aeration. The bacterium's ability to adhere to surfaces allows it to colonize various substrates, making it an essential player in the microbial community. Additionally, Caulobacter soli is adapted to fluctuating environmental conditions, demonstrating resilience in variable moisture levels and temperature ranges. Its survival strategies include the production of protective biofilms, which help it withstand desiccation and nutrient scarcity. This adaptability ensures its persistence in diverse habitats, from wetlands to agricultural soils. Overall, Caulobacter soli is a key contributor to the health and sustainability of its associated biomes, influencing both microbial diversity and ecosystem functionality.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Caulobacter soli has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Caulobacter soli is utilized for its unique ability to perform biodegradation of complex organic compounds. This characteristic makes it valuable in waste management, particularly in the treatment of wastewater and contaminated soils, where it can help break down pollutants and restore environmental quality. In the realm of biofuel production, Caulobacter soli can be involved in fermentation processes that convert organic materials into biofuels. Its metabolic pathways allow for the efficient conversion of biomass into ethanol or other biofuels, contributing to sustainable energy solutions. Additionally, Caulobacter soli has potential applications in pharmaceutical development. Its ability to produce specific enzymes can be harnessed for the synthesis of pharmaceutical compounds, making it a candidate for enzyme production in drug manufacturing processes. Overall, the versatility of Caulobacter soli in these industrial sectors highlights its importance as a microorganism that can contribute to environmental sustainability and innovative biotechnological solutions.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	meta-llama/llama-3-8b-instruct:nitro	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro	google/gemini-pro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openchat/openchat-7b
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain variable ✗	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Animal pathogenicity	N/A	false	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	false	true	true	true	true	true	false	false	false	false	false	false	false	false	false	false	false	true	true	true	true	true	true	true	true	false	false
Host association	N/A	false	false	false	true	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗

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