Pseudoclavibacter alba

General Information

Pseudoclavibacter alba is a fascinating microorganism that belongs to the genus Pseudoclavibacter. This bacterium is particularly interesting due to its unique metabolic capabilities and its potential applications in biotechnology and environmental science. One of the most notable characteristics of Pseudoclavibacter alba is its ability to degrade complex organic compounds. This makes it a valuable candidate for bioremediation efforts, where it can be used to clean up contaminated environments by breaking down pollutants. Additionally, its metabolic versatility allows it to thrive in a variety of ecological niches, contributing to its resilience and adaptability. From a research perspective, Pseudoclavibacter alba is also intriguing due to its genomic features. Studies have shown that it possesses a diverse set of genes related to the degradation of aromatic compounds, which are often found in industrial waste. This genetic toolkit not only underscores its potential for environmental applications but also provides insights into the evolutionary pathways that enable such metabolic diversity. Moreover, Pseudoclavibacter alba has been observed to produce certain bioactive compounds that could have pharmaceutical applications. These compounds may exhibit antimicrobial properties, making this bacterium a potential source of new antibiotics or other therapeutic agents. In summary, Pseudoclavibacter alba stands out due to its environmental resilience, metabolic diversity, and biotechnological potential. Its ability to degrade pollutants and produce bioactive compounds makes it a subject of significant interest in both environmental and medical research fields.

Pseudoclavibacter alba is a fascinating actinobacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This microorganism is primarily isolated from soil environments, particularly those rich in organic matter, which suggests its role in nutrient cycling and soil health. What makes Pseudoclavibacter alba particularly interesting is its ability to produce a variety of bioactive compounds, including antimicrobial agents that could be valuable in the development of new antibiotics. The organism is also noted for its metabolic versatility, allowing it to degrade complex organic materials, which positions it as a potential candidate for bioremediation efforts. This capability to break down pollutants and contribute to soil restoration is increasingly important in the context of environmental sustainability. Furthermore, Pseudoclavibacter alba has been studied for its genetic and biochemical pathways, providing insights into the mechanisms of secondary metabolite production. This research could lead to the discovery of novel compounds with pharmaceutical applications. Overall, the unique characteristics of Pseudoclavibacter alba not only highlight its ecological importance but also its potential as a resource in the fields of microbiology and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Micrococcales

Family: Microbacteriaceae

Genus: Pseudoclavibacter

Species: Pseudoclavibacter alba

NCBI ID

272241

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/017/167/395/GCA_017167395.1_ASM1716739v1

File for sequence-based predictions:
GCA_017167395.1_ASM1716739v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudoclavibacter alba is a member of the Actinobacteria phylum and has been studied for its potential role in human health and disease. While it is primarily known for its presence in soil and plant environments, its clinical implications are emerging. One of the notable aspects of Pseudoclavibacter alba is its potential association with infections in immunocompromised individuals, although specific cases are limited in the literature. Pathogenicity is not well established, but its ability to produce bioactive compounds may suggest a role in antimicrobial resistance mechanisms, particularly in relation to other bacterial species. Furthermore, the organism's interaction with the human microbiome is an area of interest, as it may contribute to the overall microbial diversity that supports immune response and gut health. However, more research is needed to fully understand its implications in disease associations and its potential as a therapeutic agent. Currently, there are no documented outbreaks or significant clinical applications such as probiotics or vaccines directly linked to Pseudoclavibacter alba, but its study may provide insights into the complex interactions within microbial communities and their effects on human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudoclavibacter alba is a bacterium commonly associated with various soil environments and plant-associated habitats. This microorganism thrives in nutrient-rich soils, particularly in areas where organic matter is abundant, such as decaying plant material and compost. Its presence is often linked to the breakdown of complex organic compounds, playing a crucial role in nutrient cycling within these ecosystems. In terms of ecological niches, Pseudoclavibacter alba is known for its ability to form symbiotic relationships with certain plants, aiding in nutrient uptake and enhancing plant growth. This interaction is particularly significant in agricultural settings, where the bacterium can improve soil health and crop yields by promoting the availability of essential nutrients. Additionally, Pseudoclavibacter alba exhibits remarkable environmental adaptability, allowing it to survive in varying conditions, including fluctuations in moisture and temperature. This adaptability makes it a vital component of terrestrial biomes, contributing to the overall resilience of the ecosystem. Overall, Pseudoclavibacter alba plays a significant role in maintaining the health of soil ecosystems, supporting plant life, and facilitating the decomposition process, which is essential for nutrient recycling in nature.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudoclavibacter alba has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Pseudoclavibacter alba is utilized for its ability to produce specific enzymes that can be harnessed in biocatalysis processes. These enzymes can facilitate chemical reactions under mild conditions, making them valuable in the production of pharmaceuticals and other fine chemicals. In the realm of waste management, Pseudoclavibacter alba has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic compounds. This property is particularly useful in treating industrial effluents and contaminated soils, where the microorganism can help in the detoxification and removal of hazardous substances. Furthermore, there is growing interest in the use of Pseudoclavibacter alba in biofuel production. The organism can be involved in fermentation processes that convert biomass into bioethanol or other biofuels, contributing to sustainable energy solutions. Its metabolic pathways can be optimized to enhance yield and efficiency in biofuel production. In addition to these applications, Pseudoclavibacter alba may also play a role in pharmaceutical development. Its unique metabolic capabilities could be explored for the production of bioactive compounds, which may lead to the discovery of new drugs or therapeutic agents. Overall, the versatility of Pseudoclavibacter alba positions it as a valuable microorganism in various industrial sectors, particularly in enhancing sustainability and efficiency in processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-flash-1.5	anthropic/claude-3.5-sonnet	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	google/gemma-7b-it	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	false	true	true	true	true	true	true	true	true	false	false	true	true	false	false	true	true	true	true	true	true	false	false	false	false	false	false
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	false	true	true	false	false	true	true	false	false	false	false	true	true	false	false	false	false	true	true	true	true	false	false	false	false	true	true
Host association	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓

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