Pseudomonas tohonis

General Information

Pseudomonas tohonis is a fascinating microorganism that belongs to the genus Pseudomonas, which is known for its metabolic diversity and environmental versatility. This species was first isolated from a freshwater lake, indicating its adaptability to aquatic environments. One of the most intriguing aspects of Pseudomonas tohonis is its ability to degrade various organic compounds, making it a valuable candidate for bioremediation efforts. Bioremediation Potential: Pseudomonas tohonis has shown a remarkable capacity to break down pollutants, including aromatic hydrocarbons and other complex organic molecules. This makes it an excellent organism for cleaning up contaminated water bodies and soil environments. Metabolic Versatility: The metabolic pathways of Pseudomonas tohonis are highly versatile, allowing it to utilize a wide range of substrates for growth. This characteristic is particularly interesting for researchers studying microbial ecology and the potential for industrial applications. Genomic Insights: The genome of Pseudomonas tohonis reveals a wealth of genes associated with environmental adaptability and stress resistance. These genetic traits provide insights into how this organism thrives in diverse and often challenging environments. Ecological Role: In its natural habitat, Pseudomonas tohonis plays a crucial role in nutrient cycling and maintaining the health of aquatic ecosystems. Its ability to degrade organic matter helps in the natural purification processes of freshwater systems. Overall, Pseudomonas tohonis stands out due to its bioremediation capabilities, metabolic flexibility, and genomic adaptability, making it a subject of significant interest in environmental microbiology and biotechnology research.

Pseudomonas tohonis is a fascinating bacterium primarily known for its role in aquatic environments, particularly in marine ecosystems. This organism is notable for its ability to degrade a variety of organic compounds, making it an important player in bioremediation processes. Its metabolic versatility allows it to utilize diverse substrates, which is a significant characteristic that enhances its ecological role in nutrient cycling and pollution mitigation. One of the most interesting aspects of Pseudomonas tohonis is its production of bioactive compounds, including antimicrobial agents. These compounds have garnered attention for their potential applications in developing new antibiotics, especially in an era where antibiotic resistance is a growing concern. The ability of this species to produce such compounds highlights its value in pharmaceutical research and development. Additionally, Pseudomonas tohonis has been studied for its interactions with other microorganisms in its environment. Its role in biofilm formation and community dynamics can provide insights into microbial ecology and the complex relationships that exist within microbial communities. Understanding these interactions can lead to advancements in biotechnology and environmental management. Overall, the unique metabolic capabilities, potential for antibiotic production, and ecological significance of Pseudomonas tohonis make it a valuable organism for research in microbiology, environmental science, and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas tohonis

NCBI ID

2725477

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/012/767/755/GCA_012767755.2_ASM1276775v2

File for sequence-based predictions:
GCA_012767755.2_ASM1276775v2_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas tohonis is a gram-negative bacterium that has been associated with various clinical implications, particularly in immunocompromised patients. It is known to cause infections in humans, especially in those with underlying health conditions or those undergoing invasive procedures. The bacterium is often implicated in wound infections, pneumonia, and bacteremia, making it a significant pathogen in clinical settings. Pathogenicity is attributed to its ability to form biofilms and produce a range of virulence factors, including exotoxins and enzymes that facilitate tissue invasion and immune evasion. One of the critical concerns regarding Pseudomonas tohonis is its antimicrobial resistance. This organism has shown resistance to multiple classes of antibiotics, complicating treatment options and leading to increased morbidity and mortality in affected patients. The mechanisms of resistance include the production of beta-lactamases and efflux pumps, which can expel antibiotics from the bacterial cell, rendering them ineffective. In terms of immune evasion, Pseudomonas tohonis can alter its surface structures and produce polysaccharide capsules that hinder phagocytosis by immune cells. This ability to evade the host's immune response contributes to its persistence in clinical environments and its role in chronic infections. While Pseudomonas tohonis is not as widely studied as other members of the Pseudomonas genus, its clinical relevance cannot be overlooked, particularly in the context of nosocomial infections and the challenges posed by antibiotic resistance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas tohonis is a bacterium commonly associated with various aquatic environments, particularly in marine ecosystems. This microorganism thrives in coastal waters and is often found in association with marine organisms, including fish and invertebrates. Its presence is notable in environments where organic matter is abundant, as it plays a crucial role in the decomposition process, contributing to nutrient cycling within the ecosystem. In these marine habitats, Pseudomonas tohonis exhibits decompositional activity, breaking down organic materials and thus facilitating the availability of nutrients for other organisms. This bacterium is also known for its ability to form biofilms, which can enhance its survival in fluctuating environmental conditions and provide a protective niche for other microorganisms. Additionally, Pseudomonas tohonis has been documented to engage in symbiotic relationships with certain marine species, potentially aiding in their health and resilience against pathogens. Its adaptability to varying salinity levels and temperatures allows it to occupy a range of ecological niches within the marine biome, making it a significant player in the dynamics of these environments. Overall, Pseudomonas tohonis exemplifies the intricate interactions and ecological roles that microorganisms fulfill in sustaining the health and balance of marine ecosystems.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas tohonis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where Pseudomonas tohonis is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are effective in breaking down complex organic compounds, making them valuable in the production of biofuels through fermentation processes. In the realm of waste management, Pseudomonas tohonis is recognized for its capacity to degrade pollutants, particularly in the treatment of wastewater. This organism can metabolize a variety of toxic compounds, contributing to bioremediation efforts aimed at cleaning contaminated environments. Its enzymatic activity plays a crucial role in the breakdown of hydrocarbons, making it a candidate for use in oil spill clean-ups. Furthermore, in pharmaceutical development, Pseudomonas tohonis has been studied for its potential in the production of bioactive compounds. These compounds can serve as precursors for the synthesis of various pharmaceuticals, showcasing the organism's versatility in the biotechnology sector. Overall, Pseudomonas tohonis demonstrates a multifaceted role in industrial applications, particularly in fermentation, biodegradation, and enzyme production, making it a valuable microorganism in modern biotechnological processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	openchat/openchat-7b	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	true	false	true	true	false	true	true	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	true	true	false	false
Biosafety level	N/A	biosafety level 1	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 2	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 1	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 1
Health association	N/A	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	false	false
Host association	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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