Oricola thermophila

General Information

Oricola thermophila is a fascinating microorganism primarily due to its thermophilic nature, meaning it thrives at relatively high temperatures. This characteristic makes it particularly interesting for industrial and biotechnological applications where processes often occur at elevated temperatures. The ability to withstand and function optimally in such environments suggests that O. thermophila possesses unique enzymes and metabolic pathways that are stable and active at high temperatures, which can be harnessed for various biochemical processes. One of the most notable features of Oricola thermophila is its potential for bioremediation. The organism's enzymes can degrade complex organic compounds, making it a valuable candidate for cleaning up industrial waste and pollutants that are typically resistant to breakdown at lower temperatures. This capability is not only environmentally beneficial but also economically advantageous, as it can reduce the costs associated with waste management. Additionally, O. thermophila has been studied for its role in bioconversion processes. Its ability to convert raw materials into valuable products, such as biofuels or bioplastics, under high-temperature conditions, opens up new avenues for sustainable production methods. The stability of its enzymes at high temperatures can lead to more efficient and robust industrial processes, reducing the need for cooling and thereby saving energy. In summary, Oricola thermophila stands out due to its thermophilic properties, making it a prime candidate for applications in bioremediation and bioconversion. Its unique enzymatic capabilities at elevated temperatures offer significant advantages for industrial processes, highlighting its potential as a valuable resource in both environmental and industrial biotechnology.

Oricola thermophila is a fascinating thermophilic bacterium that thrives in high-temperature environments, such as hot springs and geothermal areas. This organism is particularly interesting due to its ability to withstand extreme heat, with optimal growth temperatures often exceeding 70°C (158°F). Its unique adaptations to such harsh conditions make it a valuable subject for research in the fields of biotechnology and extremophile biology. One of the standout features of O. thermophila is its metabolic versatility. It is capable of utilizing a variety of organic compounds as carbon sources, which allows it to thrive in diverse ecological niches. This metabolic flexibility not only contributes to its survival in extreme environments but also makes it a potential candidate for biotechnological applications, such as bioremediation and bioenergy production. Additionally, O. thermophila produces a range of thermostable enzymes, which are of great interest for industrial processes that require high temperatures. These enzymes can be used in various applications, including the food industry, biofuels, and the production of pharmaceuticals. The study of these enzymes can lead to innovations in enzyme engineering and the development of more efficient industrial processes. Furthermore, the genomic and proteomic studies of O. thermophila provide insights into the molecular mechanisms that enable life at high temperatures. Understanding these mechanisms can enhance our knowledge of protein stability and folding, which has implications for both basic science and applied research. In summary, Oricola thermophila stands out as a remarkable organism not only for its extreme thermophilic nature but also for its potential applications in biotechnology and its contributions to our understanding of life in extreme environments.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Alphaproteobacteria

Order: Hyphomicrobiales

Family: Ahrensiaceae

Genus: Oricola

Species: Oricola thermophila

NCBI ID

2742145

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/013/358/405/GCA_013358405.1_ASM1335840v1

File for sequence-based predictions:
GCA_013358405.1_ASM1335840v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Oricola thermophila is a thermophilic bacterium that has garnered attention for its potential applications in biotechnology rather than direct clinical implications in human health. However, its relevance can be inferred through its metabolic capabilities and interactions with other microorganisms in various environments. While O. thermophila is not directly associated with human diseases, its role in biogeochemical cycles and its ability to degrade complex organic materials may have indirect implications for human health, particularly in waste management and environmental microbiology. Pathogenicity: Currently, there is no documented evidence linking O. thermophila to infections or disease in humans. Its thermophilic nature suggests that it thrives in high-temperature environments, which may limit its pathogenic potential in the human body, where temperatures are significantly lower. Antimicrobial Resistance: There is limited information regarding antimicrobial resistance in O. thermophila. However, studying thermophilic organisms can provide insights into resistance mechanisms that may be applicable to other pathogens. Medical Applications: The primary interest in O. thermophila lies in its potential use in industrial processes, such as bioremediation and bioenergy production, rather than direct medical applications like probiotics or vaccines. Its enzymatic properties may be harnessed for the breakdown of pollutants or in the production of biofuels, which can indirectly benefit public health by improving environmental conditions. In summary, while Oricola thermophila does not have direct clinical implications, its environmental roles and potential biotechnological applications may contribute to broader public health initiatives.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Oricola thermophila is a thermophilic bacterium primarily found in high-temperature environments such as hot springs and geothermal areas. This microorganism thrives in conditions where temperatures can exceed 70°C (158°F), showcasing its remarkable adaptation to extreme heat. The ecological niche of Oricola thermophila is characterized by its ability to metabolize organic compounds, contributing to the nutrient cycling within these extreme habitats. In these geothermal ecosystems, Oricola thermophila plays a crucial role in the breakdown of complex organic materials, which supports the overall productivity of the microbial community. Its metabolic processes can influence the chemical composition of the surrounding environment, affecting the availability of nutrients for other organisms. Additionally, Oricola thermophila often engages in symbiotic relationships with other extremophiles, such as archaea and other bacteria, facilitating a diverse microbial community that can withstand harsh conditions. These interactions can enhance the resilience of the ecosystem, allowing it to maintain stability despite fluctuations in temperature and nutrient availability. Overall, the presence of Oricola thermophila in hot spring biomes not only highlights the adaptability of life in extreme conditions but also underscores its importance in maintaining the ecological balance within these unique environments.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Oricola thermophila has shown significant potential in various industrial applications due to its unique thermophilic properties. One of the primary areas of interest is in biotechnology, where Oricola thermophila is utilized in fermentation processes to produce bioactive compounds. Its ability to thrive at elevated temperatures allows for faster fermentation rates and higher yields of products such as organic acids and alcohols, which are valuable in food and beverage industries. In the realm of waste management, Oricola thermophila plays a crucial role in biodegradation processes. It can effectively break down complex organic materials in high-temperature environments, making it suitable for treating industrial waste and organic sludge. This capability not only helps in reducing waste volume but also in recovering valuable resources from waste streams. Furthermore, the organism is being explored for its potential in biofuel production. Its enzymatic activity is particularly beneficial in the breakdown of lignocellulosic biomass, which is a key step in the production of second-generation biofuels. By enhancing the efficiency of enzyme production, Oricola thermophila can contribute to more sustainable biofuel processes. In pharmaceutical development, the thermophilic enzymes derived from Oricola thermophila are of great interest for their stability and activity at high temperatures, which can be advantageous in various biochemical reactions. These enzymes can be utilized in the synthesis of pharmaceuticals, providing a more efficient and environmentally friendly alternative to traditional chemical synthesis methods. Overall, Oricola thermophila demonstrates a wide range of applications across multiple industries, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development, making it a valuable organism for future industrial innovations.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	false ✗	true ✓	true ✓	false ✗	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain positive ✗	gram stain negative ✓	gram stain negative ✓	gram stain variable ✗	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain positive ✗	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain positive ✗
Aerophilicity	aerobic	aerobic ✓	aerotolerant ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	anaerobic ✗	anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	false	true	true	false	false	false	false	true	true	false	false	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	true	true	true	true	true	true
Host association	N/A	false	false	false	false	true	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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