Pseudomonas peradeniyensis

General Information

Pseudomonas peradeniyensis is a fascinating microorganism that belongs to the genus Pseudomonas, which is known for its metabolic diversity and environmental versatility. This species was first isolated from soil in Sri Lanka, highlighting its adaptability to various ecological niches. One of the most intriguing aspects of Pseudomonas peradeniyensis is its potential for bioremediation. Bioremediation refers to the use of microorganisms to degrade or detoxify pollutants, and Pseudomonas peradeniyensis has shown promise in breaking down complex organic compounds, making it valuable for environmental cleanup efforts. Another notable feature of Pseudomonas peradeniyensis is its ability to produce a variety of secondary metabolites. These compounds can have antimicrobial properties, which opens up possibilities for developing new antibiotics or antifungal agents. The production of these metabolites is often regulated by complex genetic pathways, making this organism a subject of interest for genetic and biochemical research. Additionally, Pseudomonas peradeniyensis exhibits a high degree of genetic plasticity, which allows it to adapt to different environmental conditions and stresses. This adaptability is partly due to its large genome, which contains numerous genes involved in regulatory functions, transport systems, and metabolic pathways. This genetic richness makes Pseudomonas peradeniyensis an excellent model organism for studying microbial ecology and evolution. In summary, Pseudomonas peradeniyensis is a microorganism of significant interest due to its bioremediation potential, ability to produce secondary metabolites, and genetic adaptability. These characteristics make it a valuable subject for research in environmental science, biotechnology, and microbial genetics.

Pseudomonas peradeniyensis is a fascinating bacterium that belongs to the genus Pseudomonas, known for its metabolic versatility and ecological significance. This species is particularly interesting due to its ability to thrive in diverse environments, including soil, water, and even plant surfaces. One of the standout features of Pseudomonas peradeniyensis is its capacity to degrade a wide range of organic compounds, making it a valuable organism in bioremediation efforts. Researchers are keenly interested in its potential to break down pollutants, such as hydrocarbons and other environmental contaminants, which can help in cleaning up oil spills and other ecological disasters. Additionally, Pseudomonas peradeniyensis has been studied for its role in plant growth promotion. It can produce various plant growth-promoting substances, which can enhance plant health and yield. This characteristic makes it a candidate for use in sustainable agriculture, where it could be employed as a biofertilizer or biocontrol agent against plant pathogens. Moreover, the genetic and metabolic pathways of Pseudomonas peradeniyensis are of significant interest to microbiologists. Its genome contains genes that confer resistance to various antibiotics, which raises important questions about the evolution of antibiotic resistance in bacteria. Understanding these mechanisms can provide insights into combating antibiotic resistance in clinical settings. In summary, Pseudomonas peradeniyensis is not only a model organism for studying microbial ecology and bioremediation but also holds promise for agricultural applications and understanding antibiotic resistance. Its diverse capabilities and adaptability make it a subject of ongoing research and exploration in microbiology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas peradeniyensis

NCBI ID

2745488

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/268/935/GCA_014268935.2_ASM1426893v2

File for sequence-based predictions:
GCA_014268935.2_ASM1426893v2_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas peradeniyensis is a member of the Pseudomonas genus, which is known for its environmental versatility and clinical significance. While P. peradeniyensis is less commonly discussed than its relatives, it has been associated with various clinical implications, particularly in immunocompromised patients. Infections caused by this organism can lead to serious complications, especially in individuals with underlying health conditions or those undergoing invasive procedures. The organism is known to exhibit pathogenicity through its ability to form biofilms, which can protect it from both the host immune response and antimicrobial agents. One of the notable features of P. peradeniyensis is its potential for antimicrobial resistance, which is a significant concern in clinical settings. Resistance mechanisms may include the production of beta-lactamases and efflux pumps, which can render standard antibiotic treatments ineffective. This resistance complicates the management of infections and necessitates the use of more potent or combination therapies. In terms of immune evasion, P. peradeniyensis can manipulate host immune responses, allowing it to persist in the host and contribute to chronic infections. The organism's ability to adapt to various environments, including the human body, underscores its relevance in clinical microbiology. While there is limited documentation on specific outbreaks directly linked to P. peradeniyensis, its close relatives, such as Pseudomonas aeruginosa, are well-known for causing nosocomial infections. Therefore, understanding the clinical implications of P. peradeniyensis is crucial for infection control and prevention strategies in healthcare settings. Further research is needed to fully elucidate its role in human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas peradeniyensis is a versatile bacterium commonly found in a variety of habitat types, particularly in soil and water environments. This microorganism thrives in aerobic conditions, often inhabiting nutrient-rich areas where organic matter is abundant. Its adaptability allows it to survive in both natural and anthropogenic environments, making it a significant player in various ecological niches. Soil Biomes: In soil ecosystems, Pseudomonas peradeniyensis contributes to the decomposition of organic materials, playing a crucial role in nutrient cycling. It interacts with other soil microorganisms, forming complex communities that enhance soil health and fertility. This bacterium is known for its ability to degrade pollutants, thus participating in bioremediation processes that help restore contaminated soils. Aquatic Environments: In freshwater and marine ecosystems, Pseudomonas peradeniyensis can be found in sediments and water columns. It is involved in the breakdown of organic compounds, contributing to the overall productivity of these environments. Its presence can indicate the health of aquatic systems, as it often thrives in areas with high levels of organic pollution. Symbiotic Relationships: This bacterium has been documented to engage in symbiotic relationships with plants, promoting growth and enhancing resistance to pathogens. By producing plant growth-promoting substances, Pseudomonas peradeniyensis aids in the establishment of healthy root systems, which is vital for plant survival in various ecosystems. Overall, Pseudomonas peradeniyensis exemplifies the adaptability and ecological significance of bacteria in both terrestrial and aquatic biomes, highlighting its role in maintaining ecosystem balance and health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas peradeniyensis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to degrade a wide range of organic pollutants, making it valuable in waste management processes. This organism can effectively break down hydrocarbons, which is particularly useful in the treatment of oil spills and other petroleum-related waste. In the realm of biofuel production, Pseudomonas peradeniyensis can be involved in the fermentation of organic materials, converting them into biofuels such as ethanol or biodiesel. Its metabolic pathways allow for the efficient conversion of waste biomass into energy-rich products, contributing to sustainable energy solutions. Furthermore, this microorganism has applications in pharmaceutical development due to its ability to produce various enzymes that can be harnessed for drug synthesis and biocatalysis. The enzymatic activity of Pseudomonas peradeniyensis can facilitate the production of complex molecules, enhancing the efficiency of pharmaceutical manufacturing processes. Overall, Pseudomonas peradeniyensis demonstrates a versatile profile, making it a valuable asset in environmental biotechnology, biodegradation, and the development of sustainable industrial processes.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	false	true	false	true	false	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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