Pseudomonas farsensis

General Information

Pseudomonas farsensis is a fascinating microorganism that has garnered attention due to its unique environmental adaptability and potential applications in bioremediation. This bacterium was first isolated from soil samples, indicating its natural habitat is terrestrial environments. One of the most noteworthy characteristics of Pseudomonas farsensis is its ability to thrive in environments with high levels of heavy metals, such as cadmium and lead. This makes it a prime candidate for use in bioremediation efforts to clean up contaminated soils and water sources. Another interesting aspect of Pseudomonas farsensis is its metabolic versatility. It can utilize a wide range of organic compounds as carbon sources, which underscores its adaptability and potential utility in various industrial processes. This metabolic flexibility is a hallmark of the Pseudomonas genus, but Pseudomonas farsensis stands out due to its efficiency and robustness in degrading complex organic pollutants. From a research perspective, Pseudomonas farsensis is valuable for studying microbial resistance mechanisms to heavy metals and other environmental stressors. Understanding these mechanisms can lead to the development of new strategies for managing pollution and improving environmental health. Additionally, the genetic and enzymatic pathways involved in its metabolic processes are of significant interest for biotechnological applications, including the synthesis of valuable biochemicals and biofuels. In summary, Pseudomonas farsensis is a microorganism of considerable interest due to its heavy metal resistance, metabolic versatility, and potential applications in bioremediation and biotechnology. Its unique characteristics make it a valuable subject for ongoing and future research aimed at addressing environmental and industrial challenges.

Pseudomonas farsensis is a fascinating bacterium that has garnered attention due to its unique metabolic capabilities and ecological significance. This species is part of the diverse genus Pseudomonas, known for its versatility in utilizing a wide range of organic compounds as carbon sources. One of the most interesting aspects of Pseudomonas farsensis is its ability to thrive in extreme environments, which makes it a valuable organism for studying microbial adaptation and survival strategies under stress conditions. The organism has been isolated from various ecological niches, including soil and water, indicating its role in nutrient cycling and environmental remediation. Its potential for bioremediation is particularly noteworthy, as Pseudomonas species are often employed in the degradation of pollutants, including hydrocarbons and heavy metals. This capability not only highlights the bacterium's ecological importance but also its potential application in biotechnology and environmental science. Furthermore, Pseudomonas farsensis exhibits interesting genetic traits that can be explored for biotechnological applications. The genetic diversity within this species may provide insights into the mechanisms of antibiotic resistance and metabolic pathways, which are crucial for developing new strategies to combat bacterial infections and enhance bioprocessing techniques. In summary, Pseudomonas farsensis stands out due to its extreme adaptability, bioremediation potential, and genetic diversity, making it a valuable subject for research in microbiology, ecology, and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas farsensis

NCBI ID

2745492

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/037/483/245/GCF_037483245.1_ASM3748324v1

File for sequence-based predictions:
GCF_037483245.1_ASM3748324v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas farsensis is a Gram-negative bacterium that has been associated with various clinical implications, particularly in immunocompromised patients. It is known to be a part of the normal flora in some environments but can act as an opportunistic pathogen. Infections caused by Pseudomonas farsensis can lead to serious complications, especially in individuals with weakened immune systems, such as those undergoing chemotherapy or with chronic diseases. The bacterium is often implicated in nosocomial infections, including pneumonia, urinary tract infections, and bloodstream infections. One of the significant concerns regarding Pseudomonas farsensis is its antimicrobial resistance. This organism has shown resistance to multiple classes of antibiotics, making treatment challenging. The mechanisms of resistance include the production of beta-lactamases, efflux pumps, and alterations in membrane permeability, which contribute to its ability to evade standard antibiotic therapies. In terms of immune evasion, Pseudomonas farsensis can produce biofilms, which protect it from both the host immune response and antibiotic treatment. This biofilm formation is particularly problematic in chronic infections, as it allows the bacteria to persist in the host for extended periods. While Pseudomonas farsensis is primarily recognized for its pathogenic potential, there is ongoing research into its role in bioremediation and potential applications in biotechnology. However, its clinical relevance remains a significant concern due to its association with severe infections and its ability to resist treatment.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas farsensis is a versatile bacterium commonly found in a variety of habitat types that reflect its ecological adaptability. This microorganism thrives in soil ecosystems, particularly in areas with high organic matter content, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its ability to degrade a wide range of organic compounds makes it an important player in the soil microbiome, contributing to soil health and fertility. In addition to terrestrial environments, Pseudomonas farsensis is also associated with aquatic ecosystems, including freshwater and marine habitats. Here, it can be found in sediments and water columns, where it participates in the breakdown of pollutants and organic materials, thus aiding in bioremediation processes. Its metabolic versatility allows it to adapt to varying levels of oxygen, making it a key organism in both aerobic and anaerobic conditions. Notably, Pseudomonas farsensis exhibits symbiotic relationships with plants, enhancing nutrient uptake and providing protection against pathogens. This interaction underscores its importance in agricultural ecosystems, where it can improve crop health and yield. Overall, Pseudomonas farsensis is a prime example of a microorganism that thrives in diverse biomes, showcasing its ecological significance through its roles in nutrient cycling, pollution degradation, and plant health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas farsensis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Pseudomonas farsensis is utilized for its ability to produce enzymes that can catalyze a range of biochemical reactions. This enzymatic activity is particularly valuable in processes such as biodegradation, where the organism can break down complex organic compounds, making it useful in waste management and environmental remediation efforts. In the realm of waste management, Pseudomonas farsensis has been documented to effectively degrade pollutants, including hydrocarbons and other toxic substances, through its metabolic pathways. This capability allows it to be employed in bioremediation strategies, where contaminated sites can be treated to reduce environmental impact. Furthermore, the organism has potential applications in biofuel production. Its metabolic processes can be harnessed to convert biomass into biofuels, particularly through fermentation processes that yield ethanol or other biofuels from organic substrates. This makes Pseudomonas farsensis a candidate for sustainable energy solutions. In the pharmaceutical development sector, the unique metabolic capabilities of Pseudomonas farsensis may be explored for the production of bioactive compounds, which could lead to the development of new drugs or therapeutic agents. The organism's ability to synthesize various secondary metabolites can be investigated for their potential medicinal properties. Overall, Pseudomonas farsensis demonstrates a versatile profile that can be leveraged across multiple industries, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development, making it a valuable microorganism for future industrial applications.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemini-flash-1.5	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	true	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	true	true	true	false	false	true	false	false	false	true	true	false	false	true	true	true	true	true	true	true	true	true	true	false	false
Host association	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	alpha	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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