Pseudomonas zanjanensis

General Information

Pseudomonas zanjanensis is a fascinating microorganism that belongs to the genus Pseudomonas, which is known for its metabolic diversity and environmental versatility. One of the most intriguing aspects of Pseudomonas zanjanensis is its ability to thrive in a variety of environments, including soil and water, making it a valuable subject for ecological and environmental studies. One of the key characteristics of Pseudomonas zanjanensis is its potential for bioremediation. This organism has shown promise in breaking down pollutants and toxic compounds, which could be harnessed for cleaning up contaminated environments. This makes it an important candidate for research in environmental biotechnology. Additionally, Pseudomonas zanjanensis exhibits a remarkable ability to produce a range of secondary metabolites. These compounds can have antimicrobial properties, making this bacterium a potential source of new antibiotics or other bioactive molecules. This aspect is particularly valuable given the increasing concern over antibiotic resistance. From a genetic perspective, Pseudomonas zanjanensis is interesting due to its complex regulatory networks that control its metabolic pathways. Understanding these networks can provide insights into bacterial adaptability and survival mechanisms, which are crucial for developing new strategies to combat bacterial infections or enhance biotechnological applications. In summary, Pseudomonas zanjanensis stands out due to its environmental versatility, bioremediation potential, and production of bioactive secondary metabolites. These characteristics make it a valuable organism for research in environmental science, biotechnology, and medicine.

Pseudomonas zanjanensis is a fascinating bacterium that was first isolated from a soil sample in Zanjan, Iran. This species is part of the diverse genus Pseudomonas, known for its metabolic versatility and ability to thrive in various environments. One of the most interesting aspects of P. zanjanensis is its potential for bioremediation, as it has shown the ability to degrade a range of environmental pollutants, including hydrocarbons and heavy metals. This characteristic makes it a valuable organism for research in environmental microbiology and biotechnology, particularly in efforts to clean up contaminated sites. Additionally, P. zanjanensis exhibits unique biochemical properties that distinguish it from other members of the Pseudomonas genus. Its ability to utilize various carbon sources and its enzymatic capabilities are of significant interest for metabolic engineering applications. Researchers are particularly keen on exploring its genetic makeup to understand the mechanisms behind its adaptability and resilience in harsh conditions. Furthermore, the organism's interactions with other microbial communities in soil ecosystems provide insights into ecological dynamics and nutrient cycling. The study of P. zanjanensis can contribute to a broader understanding of microbial ecology and the role of bacteria in maintaining soil health. Overall, Pseudomonas zanjanensis stands out as a promising candidate for further research in both environmental and applied microbiology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas zanjanensis

NCBI ID

2745496

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/268/745/GCA_014268745.2_ASM1426874v2

File for sequence-based predictions:
GCA_014268745.2_ASM1426874v2_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas zanjanensis is a member of the Pseudomonas genus, which is known for its environmental versatility and clinical significance. While specific studies on Pseudomonas zanjanensis are limited, its close relatives, particularly Pseudomonas aeruginosa, provide insight into potential clinical implications. This organism may be associated with opportunistic infections, particularly in immunocompromised patients, due to its ability to thrive in various environments, including soil and water. It can potentially cause infections in individuals with underlying health conditions, such as cystic fibrosis or those undergoing invasive procedures. One of the notable features of Pseudomonas species is their antimicrobial resistance mechanisms. They possess various resistance genes that can confer resistance to multiple classes of antibiotics, making infections difficult to treat. This resistance is often attributed to their ability to form biofilms, which protect them from both the host immune response and antibiotic treatment. In terms of immune evasion, Pseudomonas species can produce a range of virulence factors, including exoenzymes and toxins, which can disrupt host cellular functions and evade the immune response. This ability to evade detection and destruction by the immune system is a significant factor in their pathogenicity. While Pseudomonas zanjanensis itself may not have been directly linked to specific outbreaks, its relatives are known to be involved in nosocomial infections, particularly in patients with compromised immune systems. Understanding the characteristics of Pseudomonas zanjanensis could be crucial for monitoring and managing potential infections in clinical settings, especially in environments where antibiotic resistance is a growing concern.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas zanjanensis is a versatile bacterium commonly found in various habitat types that are characterized by their nutrient-rich environments. This microorganism thrives particularly in soil ecosystems, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its ability to degrade a wide range of organic compounds makes it an important player in the soil microbiome, contributing to soil health and fertility. In addition to soil, Pseudomonas zanjanensis has been documented in aquatic environments, including freshwater systems. Here, it can be found in sediments and water columns, where it participates in the breakdown of organic materials and can influence the nutrient dynamics of these ecosystems. Its presence in these environments often indicates a healthy microbial community, as it helps in the degradation of pollutants and organic waste. Moreover, Pseudomonas zanjanensis exhibits notable interactions with its surroundings, including symbiotic relationships with plants. It can enhance plant growth by promoting nutrient availability and protecting against pathogens, thus playing a significant role in plant-microbe interactions. This bacterium's adaptability to various environmental conditions, including its resistance to certain stressors, allows it to thrive in diverse ecological niches, making it a key organism in both terrestrial and aquatic biomes.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas zanjanensis has shown significant potential in various industrial applications due to its versatile metabolic capabilities. One of the primary areas of interest is in biotechnology, where Pseudomonas zanjanensis is utilized for biodegradation of environmental pollutants. This organism can effectively break down complex organic compounds, making it valuable in waste management processes aimed at treating contaminated soils and water. In the realm of biofuel production, Pseudomonas zanjanensis has been studied for its ability to convert waste materials into biofuels through fermentation processes. This conversion not only helps in waste reduction but also contributes to sustainable energy solutions. Furthermore, the organism is recognized for its pharmaceutical development potential, particularly in the production of bioactive compounds. Its enzymatic activity can be harnessed for the synthesis of various pharmaceuticals, showcasing its importance in the biopharmaceutical industry. Overall, Pseudomonas zanjanensis exemplifies a microorganism with diverse applications across multiple industries, particularly in biodegradation, biofuel production, and enzyme production, making it a valuable asset in the pursuit of sustainable industrial practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	false	true	false	false	true	true	false	false	true	true	true	true	true	true	true	true	false	false	false	false	true	true
Host association	TRUE	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓
Plant pathogenicity	TRUE	false ✗	false ✗	false ✗	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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