Pseudomonas marvdashtae

General Information

Pseudomonas marvdashtae is a fascinating microorganism that belongs to the genus Pseudomonas, which is known for its metabolic diversity and environmental versatility. This species was first isolated from agricultural soil in Marvdasht, Iran, and has since garnered interest due to its unique characteristics and potential applications in biotechnology and agriculture. One of the most intriguing aspects of Pseudomonas marvdashtae is its ability to produce a variety of secondary metabolites, which can have antimicrobial properties. This makes it a candidate for use in biocontrol, where it could help manage plant pathogens and reduce the reliance on chemical pesticides. The production of these metabolites is not only beneficial for plant health but also highlights the organism's complex regulatory networks and adaptability to different environmental conditions. Another notable feature of Pseudomonas marvdashtae is its capacity for nitrogen fixation. This trait is particularly valuable in agricultural settings, as it can enhance soil fertility and promote plant growth by converting atmospheric nitrogen into a form that plants can readily absorb. This ability underscores the organism's potential role in sustainable agriculture practices. Additionally, Pseudomonas marvdashtae exhibits a remarkable ability to degrade various environmental pollutants, including hydrocarbons and heavy metals. This biodegradation capability positions it as a promising agent for bioremediation efforts, where it could be employed to clean up contaminated soils and water bodies, thereby mitigating environmental pollution. In summary, Pseudomonas marvdashtae is a microorganism of significant interest due to its antimicrobial metabolite production, nitrogen fixation capabilities, and biodegradation potential. These characteristics not only make it a valuable subject for scientific research but also highlight its potential applications in agriculture and environmental management.

Pseudomonas marvdashtae is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. Isolated from the Marvdasht region in Iran, this species thrives in environments rich in organic matter, showcasing its adaptability to diverse ecological conditions. One of the most interesting aspects of Pseudomonas marvdashtae is its ability to degrade a variety of pollutants, making it a valuable candidate for bioremediation efforts. This characteristic positions it as a potential agent for cleaning up contaminated environments, particularly those affected by hydrocarbons and other toxic compounds. The metabolic versatility of Pseudomonas marvdashtae allows it to utilize a wide range of carbon sources, which is a hallmark of the Pseudomonas genus. This adaptability not only aids in its survival in fluctuating environments but also enhances its utility in industrial applications, such as the production of bioplastics and other biodegradable materials. Furthermore, its production of secondary metabolites, including antimicrobial compounds, opens avenues for research into new antibiotics and other therapeutic agents. In addition to its environmental and industrial significance, Pseudomonas marvdashtae serves as a model organism for studying microbial interactions within its habitat. Understanding its ecological role can provide insights into microbial community dynamics and the impact of environmental changes on these communities. Overall, Pseudomonas marvdashtae stands out not only for its resilience and versatility but also for its potential contributions to environmental science and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas marvdashtae

NCBI ID

2745500

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/268/655/GCA_014268655.2_ASM1426865v2

File for sequence-based predictions:
GCA_014268655.2_ASM1426865v2_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas marvdashtae is a Gram-negative bacterium that has been identified in various environmental samples, particularly in soil and water. While its clinical implications are not as extensively documented as those of other Pseudomonas species, it is important to consider its potential role in human health and disease. Pseudomonas species are known for their ability to cause infections in immunocompromised individuals, and there is a possibility that P. marvdashtae could exhibit similar pathogenicity under certain conditions. Pathogenicity in Pseudomonas species is often associated with their ability to form biofilms, produce a variety of virulence factors, and evade the immune response of the host. Furthermore, many Pseudomonas species are notorious for their antimicrobial resistance, which poses significant challenges in clinical settings. Although specific data on P. marvdashtae regarding resistance mechanisms is limited, it is reasonable to infer that it may share similar resistance traits with other members of the genus, such as the production of beta-lactamases or efflux pumps. Understanding the ecological niche and potential pathogenicity of P. marvdashtae is crucial, especially in the context of environmental exposure and its implications for human health. As research continues, the organism may reveal more about its interactions with the human body and its potential role in disease outbreaks or infections.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas marvdashtae has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to produce enzymes that can be harnessed in various biochemical processes. For instance, its enzymatic activity is beneficial in biodegradation, allowing it to break down complex organic compounds, which is particularly useful in waste management and environmental cleanup efforts. In the realm of waste management, Pseudomonas marvdashtae has been documented to effectively degrade pollutants, including hydrocarbons and other toxic substances, making it a valuable organism for bioremediation processes. This capability not only helps in detoxifying contaminated environments but also contributes to the recycling of nutrients back into the ecosystem. Furthermore, this microorganism has potential applications in biofuel production. Its metabolic pathways can be exploited in fermentation processes to convert organic materials into biofuels, such as ethanol or biodiesel, thereby contributing to sustainable energy solutions. In pharmaceutical development, Pseudomonas marvdashtae may also play a role in the production of bioactive compounds, which can be further explored for their therapeutic properties. The organism's ability to synthesize various metabolites can lead to the discovery of new drugs or health supplements. Overall, the versatility of Pseudomonas marvdashtae in these industrial sectors highlights its importance as a microorganism with significant biotechnological potential.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-pro-1.5	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Host association	TRUE	false ✗	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Plant pathogenicity	TRUE	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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