Pseudomonas tehranensis

General Information

Pseudomonas tehranensis is a fascinating microorganism that belongs to the genus Pseudomonas, which is known for its metabolic diversity and environmental versatility. This species was first isolated from agricultural soil in Tehran, Iran, and has since garnered interest due to its unique characteristics and potential applications in various fields of research and industry. One of the most intriguing aspects of Pseudomonas tehranensis is its ability to degrade a wide range of organic compounds, including pollutants. This makes it a valuable candidate for bioremediation efforts, where it can be employed to clean up contaminated environments. Its metabolic pathways allow it to break down complex molecules, contributing to the detoxification of soils and water bodies. Additionally, Pseudomonas tehranensis has shown potential in the field of agriculture. It can promote plant growth by producing plant hormones such as indole-3-acetic acid (IAA) and by solubilizing phosphate, making essential nutrients more available to plants. This can lead to improved crop yields and healthier plants, which is particularly beneficial in sustainable farming practices. From a biotechnological perspective, Pseudomonas tehranensis is noteworthy for its production of biosurfactants. These surface-active substances have applications in industries ranging from pharmaceuticals to oil recovery. Biosurfactants are environmentally friendly alternatives to synthetic surfactants, and their production by Pseudomonas tehranensis highlights the organism's potential in green chemistry. Moreover, the genetic makeup of Pseudomonas tehranensis offers insights into the evolutionary adaptations that enable its survival in diverse environments. Studying its genome can reveal genes responsible for its metabolic capabilities and stress resistance, providing valuable information for genetic engineering and synthetic biology. In summary, Pseudomonas tehranensis is a microorganism of significant interest due to its bioremediation potential, agricultural benefits, and biotechnological applications. Its ability to degrade pollutants, promote plant growth, and produce valuable biosurfactants underscores its importance in both environmental and industrial contexts.

Pseudomonas tehranensis is a fascinating bacterium that was first isolated from soil in Tehran, Iran. This species is part of the diverse genus Pseudomonas, known for its metabolic versatility and ability to thrive in various environments. One of the most interesting aspects of P. tehranensis is its potential for bioremediation, as it has shown the ability to degrade a range of environmental pollutants, including hydrocarbons and heavy metals. This characteristic makes it a valuable organism for research in environmental science and biotechnology, particularly in efforts to clean up contaminated sites. Additionally, P. tehranensis has been studied for its production of secondary metabolites, which may have applications in pharmaceuticals and agriculture. The ability of this bacterium to produce compounds with antimicrobial properties could lead to the development of new antibiotics or biopesticides, addressing the growing concern of antibiotic resistance and the need for sustainable agricultural practices. Furthermore, the genetic and biochemical pathways of P. tehranensis are of interest to researchers aiming to understand the mechanisms behind its metabolic capabilities. This knowledge could contribute to advancements in synthetic biology, where the bacterium's natural processes might be harnessed for industrial applications. In summary, Pseudomonas tehranensis stands out due to its environmental resilience, bioremediation potential, and the promise it holds for future biotechnological innovations, making it a significant subject of study in microbiology and environmental research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas tehranensis

NCBI ID

2745502

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/268/615/GCA_014268615.1_ASM1426861v1

File for sequence-based predictions:
GCA_014268615.1_ASM1426861v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas tehranensis is a member of the Pseudomonas genus, which is known for its clinical significance, particularly in immunocompromised patients. This bacterium has been associated with various infections, including respiratory tract infections, urinary tract infections, and wound infections. Its pathogenicity is largely attributed to its ability to form biofilms and produce a range of virulence factors, which enhance its survival in hostile environments and contribute to its immune evasion strategies. One of the critical aspects of Pseudomonas tehranensis is its antimicrobial resistance. Like many Pseudomonas species, it exhibits resistance to multiple classes of antibiotics, making infections difficult to treat. This resistance is often due to the presence of efflux pumps, enzymatic degradation of antibiotics, and alterations in target sites. The emergence of resistant strains poses a significant challenge in clinical settings, leading to increased morbidity and mortality rates among affected patients. In terms of human health, Pseudomonas tehranensis can be particularly problematic in patients with underlying conditions such as cystic fibrosis or those undergoing invasive procedures. Its role in biofilm formation can lead to chronic infections that are difficult to eradicate, necessitating prolonged antibiotic therapy and sometimes surgical intervention. While there is limited information on specific medical applications of Pseudomonas tehranensis, the broader Pseudomonas genus has been explored for potential use in bioremediation and as a model organism in microbiological studies. However, its pathogenic potential underscores the need for careful handling and monitoring in clinical and environmental contexts.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas tehranensis is a versatile bacterium commonly found in various soil environments and aquatic ecosystems. This microorganism thrives in nutrient-rich soils and is often associated with agricultural lands, where it plays a crucial role in nutrient cycling and soil health. Its ability to degrade organic compounds makes it an important player in the biodegradation of pollutants, contributing to the detoxification of contaminated environments. In aquatic habitats, Pseudomonas tehranensis can be found in both freshwater and marine ecosystems. It is known for its adaptability to varying salinity levels, which allows it to inhabit diverse water bodies. This bacterium often engages in symbiotic relationships with plants, promoting plant growth by enhancing nutrient availability through its metabolic activities. Furthermore, Pseudomonas tehranensis exhibits notable interactions with other microorganisms, contributing to microbial communities that enhance ecosystem resilience. Its role in bioremediation efforts highlights its ecological significance, as it helps restore balance in environments affected by human activities. Overall, this bacterium exemplifies the intricate connections within terrestrial and aquatic biomes, showcasing its adaptability and ecological importance.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas tehranensis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Pseudomonas tehranensis is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes are valuable in the synthesis of pharmaceuticals and other chemical compounds, enhancing the efficiency and specificity of reactions. In the realm of waste management, Pseudomonas tehranensis has demonstrated capabilities in biodegradation, particularly in the breakdown of environmental pollutants such as hydrocarbons. This makes it a candidate for bioremediation strategies aimed at cleaning up oil spills and other contaminated sites, effectively reducing the ecological impact of industrial waste. Furthermore, this microorganism is also being explored for its role in biofuel production. Through fermentation processes, Pseudomonas tehranensis can convert organic materials into biofuels, contributing to sustainable energy solutions. Its metabolic pathways are being studied to optimize the yield of biofuels from various biomass sources. In pharmaceutical development, the unique metabolic properties of Pseudomonas tehranensis allow for the production of bioactive compounds that can serve as precursors or active ingredients in drug formulations. The organism's ability to synthesize complex molecules through fermentation processes is particularly valuable in the pharmaceutical industry. Overall, Pseudomonas tehranensis represents a versatile microorganism with promising applications across multiple industries, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	openchat/openchat-7b	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	false	true	false	false	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Host association	N/A	true	true	true	true	false	false	true	false	false	false	false	false	false	false	false	true	true	true	true	false	false	true	true	true	true	true	true	true	true
Plant pathogenicity	TRUE	true ✓	true ✓	false ✗	false ✗	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗	bacillus ✓	bacillus ✓

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