Pseudomonas hamedanensis

General Information

Pseudomonas hamedanensis is a fascinating microorganism that belongs to the genus Pseudomonas, which is well-known for its metabolic diversity and ecological versatility. This species was first isolated from agricultural soil, indicating its potential role in soil health and plant interactions. One of the most intriguing aspects of Pseudomonas hamedanensis is its ability to produce a variety of secondary metabolites, which can have antimicrobial properties. This makes it a subject of interest for biocontrol applications, where it could be used to suppress plant pathogens and promote plant growth. Another noteworthy characteristic of Pseudomonas hamedanensis is its capacity for bioremediation. The species has shown potential in degrading environmental pollutants, including hydrocarbons and heavy metals, making it valuable for environmental cleanup efforts. Its metabolic pathways are highly adaptable, allowing it to thrive in diverse and often harsh environments. From a research perspective, Pseudomonas hamedanensis offers a rich source of genetic material for studying microbial ecology, metabolic engineering, and the development of new biotechnological applications. Its genome contains numerous genes associated with stress resistance, nutrient acquisition, and secondary metabolite production, providing insights into how bacteria adapt to and influence their environments. In summary, Pseudomonas hamedanensis is a remarkable microorganism with significant potential in agriculture, environmental science, and biotechnology. Its ability to produce antimicrobial compounds and degrade pollutants underscores its importance as a subject of ongoing scientific research.

Pseudomonas hamedanensis is a fascinating bacterium that was first isolated from a soil sample in Hamedan, Iran. This species is part of the diverse genus Pseudomonas, known for its metabolic versatility and ability to thrive in various environments. One of the most interesting aspects of P. hamedanensis is its potential for bioremediation, as it has shown the ability to degrade a range of environmental pollutants, including hydrocarbons. This characteristic makes it a valuable organism for research in environmental microbiology and biotechnology, particularly in efforts to clean up contaminated sites. Additionally, P. hamedanensis has been studied for its production of secondary metabolites, which may have applications in pharmaceuticals and agriculture. The ability of this bacterium to produce antimicrobial compounds can be particularly significant in the fight against antibiotic-resistant pathogens, highlighting its potential as a source of new therapeutic agents. Furthermore, the genetic and biochemical pathways utilized by P. hamedanensis for its metabolic processes are of great interest to researchers. Understanding these pathways can provide insights into the evolutionary adaptations of bacteria in response to environmental pressures, as well as inform synthetic biology applications where such pathways could be harnessed for industrial purposes. In summary, Pseudomonas hamedanensis stands out due to its environmental resilience, bioremediation capabilities, and potential for producing valuable bioactive compounds, making it a noteworthy subject for ongoing scientific investigation.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas hamedanensis

NCBI ID

2745504

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/268/595/GCA_014268595.2_ASM1426859v2

File for sequence-based predictions:
GCA_014268595.2_ASM1426859v2_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas hamedanensis is a member of the Pseudomonas genus, which is known for its clinical significance, particularly in infections associated with immunocompromised patients. This bacterium has been isolated from various clinical specimens, indicating its potential role as a pathogen in healthcare settings. It is particularly noteworthy for its association with nosocomial infections, which can lead to severe complications in vulnerable populations, such as those with underlying health conditions or those undergoing invasive procedures. One of the critical aspects of Pseudomonas hamedanensis is its antimicrobial resistance. Like many Pseudomonas species, it may exhibit resistance to multiple classes of antibiotics, complicating treatment options. This resistance is often attributed to mechanisms such as efflux pumps, beta-lactamase production, and biofilm formation, which enhance its survival in hostile environments, including the human body. In terms of immune evasion, Pseudomonas hamedanensis can produce various virulence factors that help it evade the host's immune response. These factors may include the production of exotoxins and the ability to form biofilms, which protect the bacteria from phagocytosis and antibiotic treatment. While there is limited information on specific outbreaks directly linked to Pseudomonas hamedanensis, its close relation to other Pseudomonas species, such as Pseudomonas aeruginosa, suggests that it could be involved in similar types of infections, particularly in patients with compromised immune systems. Overall, the clinical implications of Pseudomonas hamedanensis underscore the importance of ongoing surveillance and research to better understand its pathogenic potential and to develop effective strategies for prevention and treatment of infections associated with this organism.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas hamedanensis is a versatile bacterium commonly found in a variety of habitat types, particularly in soil and water environments. This microorganism thrives in aerobic conditions, often inhabiting nutrient-rich areas where organic matter is abundant. Its adaptability allows it to survive in both terrestrial and aquatic ecosystems, making it a significant player in various biomes. Soil Biomes: In soil environments, Pseudomonas hamedanensis contributes to the decomposition of organic materials, playing a crucial role in nutrient cycling. It interacts with other soil microorganisms, forming complex microbial communities that enhance soil fertility and structure. This bacterium is known for its ability to degrade pollutants, thus participating in bioremediation processes that help restore contaminated soils. Aquatic Biomes: In freshwater and marine ecosystems, Pseudomonas hamedanensis can be found in sediments and water columns, where it contributes to the breakdown of organic matter and the cycling of nutrients. Its presence in these environments is vital for maintaining water quality and supporting the overall health of aquatic life. Additionally, Pseudomonas hamedanensis exhibits symbiotic relationships with plants, promoting growth and enhancing resistance to pathogens. This interaction underscores its importance in agricultural ecosystems, where it can be utilized as a biofertilizer or biocontrol agent. Overall, Pseudomonas hamedanensis is an ecologically significant microorganism that thrives in diverse biomes, contributing to ecosystem health and stability through its various roles in nutrient cycling, pollution degradation, and plant interactions.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The bacterium Pseudomonas hamedanensis has shown significant potential in various industrial applications due to its versatile metabolic capabilities. One of the primary areas of interest is in biotechnology, where Pseudomonas hamedanensis is utilized in biodegradation processes. This microorganism can effectively break down a range of environmental pollutants, including hydrocarbons and heavy metals, making it valuable for bioremediation efforts in contaminated sites. In the realm of waste management, Pseudomonas hamedanensis contributes to the treatment of wastewater by degrading organic matter and reducing the levels of toxic substances. Its ability to thrive in diverse environments allows it to be employed in wastewater treatment plants, enhancing the efficiency of the treatment processes. Furthermore, this microorganism has been explored for its role in biofuel production. Through fermentation processes, Pseudomonas hamedanensis can convert organic substrates into biofuels, such as ethanol and biodiesel, thereby contributing to sustainable energy solutions. In pharmaceutical development, the enzymatic activities of Pseudomonas hamedanensis are of particular interest. The organism produces various enzymes that can be harnessed for the synthesis of pharmaceutical compounds, including antibiotics and other bioactive molecules. This capability positions it as a potential candidate for the production of valuable biochemicals in the pharmaceutical industry. Overall, Pseudomonas hamedanensis demonstrates a wide range of applications across multiple industries, particularly in biodegradation, waste treatment, biofuel production, and enzyme production, making it a significant microorganism in the field of industrial microbiology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 11

LLM predicted phenotypes: 2

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-pro-1.5	anthropic/claude-3-haiku:beta	google/gemma-7b-it	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	false ✗	false ✗	true ✓	true ✓	true ✓	false ✗	true ✓	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	true	true	true	true	true	true	true	false	true	false	false	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	N/A	alpha ✗	alpha ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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