Pseudomonas khorasanensis

General Information

Pseudomonas khorasanensis is a fascinating bacterium within the genus Pseudomonas, known for its diverse metabolic capabilities and environmental versatility. This microorganism was first isolated from soil in the Khorasan province of Iran, which highlights its adaptability to various ecological niches. One of the key characteristics of Pseudomonas khorasanensis is its ability to degrade a wide range of organic compounds, making it a valuable candidate for bioremediation efforts. The species exhibits a remarkable capacity for biodegradation of pollutants, including aromatic hydrocarbons, which are common environmental contaminants. This trait is particularly significant in the context of cleaning up oil spills and industrial waste. Additionally, Pseudomonas khorasanensis has been studied for its potential in agricultural applications, such as promoting plant growth and protecting crops from pathogens through the production of antimicrobial compounds. Another interesting aspect of Pseudomonas khorasanensis is its genetic and phenotypic diversity, which allows it to thrive in various environments and under different stress conditions. This adaptability is partly due to its versatile metabolic pathways and regulatory networks, which are subjects of ongoing research. Understanding these mechanisms can provide insights into microbial ecology and the development of new biotechnological applications. In summary, Pseudomonas khorasanensis is a valuable microorganism with significant potential in environmental and agricultural biotechnology. Its ability to degrade pollutants and promote plant health makes it an important subject of study for sustainable practices and environmental conservation.

Pseudomonas khorasanensis is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This species was first isolated from soil samples in the Khorasan region of Iran, which highlights its adaptability to diverse environmental conditions. One of the most interesting aspects of Pseudomonas khorasanensis is its ability to degrade a variety of organic compounds, making it a valuable organism for bioremediation efforts. Its metabolic versatility allows it to utilize different carbon sources, which can be harnessed for environmental cleanup processes, particularly in contaminated soils and waters. Additionally, Pseudomonas khorasanensis has been studied for its potential in agricultural applications. It exhibits plant growth-promoting properties, which can enhance crop yields and resilience against pathogens. This characteristic is particularly important in sustainable agriculture, where reducing chemical fertilizers and pesticides is a growing priority. Moreover, the genetic and biochemical pathways of Pseudomonas khorasanensis are of significant interest to researchers. Understanding its mechanisms for nutrient cycling and stress response can provide insights into microbial ecology and evolution. The species may also serve as a model organism for studying the interactions between soil bacteria and plants, contributing to our knowledge of soil health and fertility. In summary, Pseudomonas khorasanensis stands out due to its ecological significance, biotechnological potential, and role in sustainable agriculture, making it a valuable subject for ongoing research and application in environmental and agricultural sciences.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas khorasanensis

NCBI ID

2745508

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/268/505/GCA_014268505.2_ASM1426850v2

File for sequence-based predictions:
GCA_014268505.2_ASM1426850v2_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas khorasanensis is a member of the Pseudomonas genus, which is known for its clinical significance, particularly in infections associated with immunocompromised patients. This bacterium has been isolated from various clinical specimens, indicating its potential role as a pathogen in healthcare settings. Clinical implications of Pseudomonas khorasanensis include its association with nosocomial infections, particularly in patients with underlying health conditions or those undergoing invasive procedures. The organism exhibits a notable ability to form biofilms, which contributes to its pathogenicity and resistance to antimicrobial agents. Antimicrobial resistance is a significant concern, as strains of Pseudomonas species, including Pseudomonas khorasanensis, have shown resistance to multiple classes of antibiotics, complicating treatment options. The mechanisms of immune evasion employed by this organism may include the production of exopolysaccharides and the ability to alter its surface structures, which can hinder the host's immune response. While specific outbreaks linked to Pseudomonas khorasanensis are not extensively documented, its presence in clinical settings underscores the need for ongoing surveillance and research to better understand its role in human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas khorasanensis is a versatile bacterium commonly found in a variety of soil environments and plant-associated habitats. This microorganism thrives particularly well in agricultural soils, where it plays a crucial role in nutrient cycling and soil health. Its ability to degrade organic matter contributes to the fertility of the soil, making it an important player in sustainable agriculture practices. In addition to its presence in soil, Pseudomonas khorasanensis is often associated with rhizospheres, the region of soil directly influenced by root secretions and associated soil microorganisms. Here, it engages in symbiotic relationships with plants, promoting growth by enhancing nutrient uptake, particularly nitrogen and phosphorus. This interaction not only benefits the plants but also helps in maintaining the overall health of the ecosystem. Furthermore, Pseudomonas khorasanensis exhibits remarkable environmental adaptability, allowing it to survive in various conditions, including those with high salinity or limited nutrients. This adaptability makes it a candidate for bioremediation efforts, where it can help in the degradation of pollutants in contaminated soils. Overall, Pseudomonas khorasanensis is a key organism in terrestrial biomes, contributing to soil health, plant growth, and environmental sustainability through its diverse ecological roles.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas khorasanensis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where this organism is utilized for its ability to perform biodegradation of environmental pollutants. Its metabolic pathways allow it to break down complex organic compounds, making it valuable in waste management processes aimed at treating contaminated soils and water. In the realm of biofuel production, Pseudomonas khorasanensis can be involved in the fermentation of biomass, converting organic materials into bioethanol or other biofuels. This process not only helps in producing renewable energy but also contributes to reducing waste by utilizing agricultural residues. Furthermore, this microorganism has potential applications in pharmaceutical development. Its enzymatic activities can be harnessed for the production of specific compounds that may serve as precursors for drug synthesis or as biocatalysts in various chemical reactions. Overall, Pseudomonas khorasanensis exemplifies the versatility of microorganisms in addressing environmental challenges and contributing to sustainable industrial practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 11

LLM predicted phenotypes: 2

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openchat/openchat-7b	openchat/openchat-7b	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain variable ✗	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	false ✗	true ✓	true ✓	true ✓	false ✗	true ✓	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true	false	false	true	true	true	true	false	false	true	true	false	false
Host association	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	alpha ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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