Pseudomonas paraversuta

General Information

Pseudomonas paraversuta is a fascinating microorganism within the genus Pseudomonas, known for its diverse metabolic capabilities and environmental versatility. This bacterium is particularly interesting due to its ability to degrade a variety of complex organic compounds, making it a valuable candidate for bioremediation efforts. One of the most notable features of Pseudomonas paraversuta is its capacity to break down pollutants, such as polycyclic aromatic hydrocarbons (PAHs), which are common environmental contaminants resulting from industrial activities and fossil fuel combustion. Additionally, Pseudomonas paraversuta exhibits a high degree of genetic adaptability, which allows it to thrive in various ecological niches, from soil and water environments to plant surfaces. This adaptability is partly due to its large and dynamic genome, which encodes a wide array of enzymes and regulatory proteins that facilitate its survival and metabolic flexibility. From a research perspective, Pseudomonas paraversuta is valuable for studying microbial ecology, environmental microbiology, and the mechanisms of biodegradation. Its ability to interact with other microorganisms and plants also makes it a subject of interest in the study of microbial communities and plant-microbe interactions. The potential applications of Pseudomonas paraversuta in biotechnology and environmental science underscore its importance as a model organism for understanding microbial processes and developing sustainable solutions for environmental challenges.

Pseudomonas paraversuta is a fascinating bacterium belonging to the genus Pseudomonas, known for its remarkable metabolic versatility and adaptability to various environments. This organism is particularly interesting due to its ability to degrade a wide range of organic compounds, making it a valuable candidate for bioremediation efforts. Its capacity to utilize complex hydrocarbons and other pollutants highlights its potential in environmental cleanup applications. One of the unique features of Pseudomonas paraversuta is its production of various secondary metabolites, which can include antimicrobial compounds. This characteristic not only contributes to its survival in competitive environments but also opens avenues for research into novel antibiotics and other bioactive substances. The exploration of these metabolites could lead to significant advancements in pharmaceutical development. Additionally, Pseudomonas paraversuta exhibits a high degree of genetic plasticity, which allows it to adapt rapidly to changing environmental conditions. This adaptability is of great interest in studies related to microbial evolution and ecology. Understanding the genetic mechanisms behind this plasticity can provide insights into how bacteria respond to environmental stresses, which is crucial for both ecological studies and industrial applications. Overall, Pseudomonas paraversuta stands out as a model organism for research in microbial ecology, bioremediation, and natural product discovery, making it a valuable subject for both academic and applied microbiological studies.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas paraversuta

NCBI ID

2750624

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/032/100/585/GCA_032100585.1_ASM3210058v1

File for sequence-based predictions:
GCA_032100585.1_ASM3210058v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas paraversuta is a member of the Pseudomonas genus, which is known for its environmental versatility and potential pathogenicity. While specific clinical data on Pseudomonas paraversuta is limited, its close relatives, particularly Pseudomonas aeruginosa, provide insights into potential clinical implications. This organism may be associated with infections in immunocompromised patients, particularly in settings such as hospitals where it can thrive in moist environments. Pathogenicity is often linked to its ability to form biofilms, which can lead to chronic infections that are difficult to treat. Furthermore, like other Pseudomonas species, Pseudomonas paraversuta may exhibit antimicrobial resistance, complicating treatment options. Resistance mechanisms can include the production of beta-lactamases and efflux pumps, which allow the organism to survive in the presence of various antibiotics. In terms of immune evasion, Pseudomonas species are known to produce a range of virulence factors, including exotoxins and proteases, which can disrupt host immune responses. This ability to evade the immune system may contribute to its role in persistent infections. While Pseudomonas paraversuta itself has not been directly linked to any major outbreaks, its potential for opportunistic infection in vulnerable populations underscores the importance of monitoring its presence in clinical settings. Further research is needed to fully elucidate the clinical significance of Pseudomonas paraversuta and its role in human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas paraversuta is a versatile bacterium commonly found in a variety of habitat types that include both natural and anthropogenic environments. This microorganism thrives in soil and water ecosystems, particularly in areas rich in organic matter. Its adaptability allows it to colonize environments that are often nutrient-poor or contaminated, making it a significant player in bioremediation processes. In soil ecosystems, Pseudomonas paraversuta contributes to nutrient cycling by breaking down organic compounds, thus enhancing soil fertility. It often engages in symbiotic relationships with plants, promoting plant growth through the production of growth-promoting substances and improving nutrient uptake. This interaction is crucial in maintaining the health of terrestrial biomes. In aquatic environments, this bacterium can be found in both freshwater and marine ecosystems. It plays a vital role in the degradation of pollutants, particularly hydrocarbons, which helps in maintaining the ecological balance. Its ability to thrive in polluted waters makes it an important organism for environmental cleanup efforts. Overall, Pseudomonas paraversuta is an essential component of its ecosystems, contributing to nutrient cycling, bioremediation, and plant health, showcasing its ecological significance across various biomes.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas paraversuta has shown significant potential in various industrial applications due to its versatile metabolic capabilities. One of the primary areas of interest is in biotechnology, where Pseudomonas paraversuta is utilized in biodegradation processes. This organism is capable of breaking down complex organic pollutants, making it valuable in waste management strategies aimed at treating contaminated environments, such as oil spills and industrial waste sites. In the realm of biofuel production, Pseudomonas paraversuta can be involved in the fermentation of organic materials, converting waste biomass into biofuels. This process not only helps in waste reduction but also contributes to sustainable energy solutions. Furthermore, the enzymatic activities of Pseudomonas paraversuta are of great interest in pharmaceutical development. The organism produces various enzymes that can be harnessed for drug synthesis and biocatalysis, enhancing the efficiency of pharmaceutical manufacturing processes. Overall, the applications of Pseudomonas paraversuta in fermentation, biodegradation, and enzyme production highlight its importance in advancing industrial biotechnology and promoting environmental sustainability.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	google/gemma-7b-it	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	anthropic/claude-3-haiku:beta	anthropic/claude-3-haiku:beta	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	openchat/openchat-7b
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	N/A	false	false	true	true	true	false	false	false	false	false	false	false	false	false	true	true	true	true	true	true	true	true	false	false	true	true	true	true	false	false
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	true	true	false	false	true	false	false	false	false	true	true	false	false	true	true	true	true	true	true	false	false	false	false	true	true	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	false	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha ✗	alpha ✗	beta ✗	beta ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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