Rugamonas brunnea

General Information

Rugamonas brunnea is a fascinating microorganism that has garnered interest due to its unique characteristics and potential applications. This bacterium belongs to the genus Rugamonas, which is known for its distinctive brown pigmentation, a feature that is particularly pronounced in R. brunnea. The pigmentation is not just a visual trait but may also play a role in the organism's ecological interactions and survival strategies. One of the most intriguing aspects of R. brunnea is its ability to produce a variety of secondary metabolites. These compounds can have antimicrobial properties, making R. brunnea a subject of interest in the search for new antibiotics. The metabolic versatility of this bacterium also suggests potential applications in bioremediation, where it could be used to degrade environmental pollutants. From a research perspective, R. brunnea is valuable due to its relatively rare occurrence and the unique ecological niches it occupies. Studying this bacterium can provide insights into microbial diversity and the evolutionary adaptations that enable survival in specific environments. Additionally, the genetic and biochemical pathways involved in its pigment production and secondary metabolite synthesis are of significant scientific interest. In summary, Rugamonas brunnea stands out due to its distinctive pigmentation, production of secondary metabolites, and potential applications in medicine and environmental science. These characteristics make it a valuable organism for further research and exploration.

Rugamonas brunnea is a fascinating bacterium that has garnered attention due to its unique ecological niche and metabolic capabilities. This organism is primarily found in freshwater environments, where it plays a significant role in the degradation of organic matter. Its ability to utilize a variety of substrates makes it an important player in nutrient cycling within aquatic ecosystems. One of the most interesting aspects of Rugamonas brunnea is its versatile metabolic pathways. It has been shown to possess the ability to degrade complex organic compounds, which can be particularly valuable in bioremediation efforts. This capability allows it to contribute to the detoxification of polluted water bodies, making it a potential candidate for environmental cleanup strategies. Additionally, Rugamonas brunnea exhibits a unique pigmentation that gives it a brownish hue, which is not only visually distinctive but may also play a role in its ecological interactions. The pigmentation is thought to be linked to its metabolic processes, possibly providing protection against UV radiation or aiding in the absorption of light for energy. From a research perspective, the study of Rugamonas brunnea can provide insights into microbial ecology, particularly in understanding how microorganisms adapt to and thrive in specific environments. Its metabolic versatility and ecological significance make it a valuable organism for further investigation in both environmental microbiology and biotechnology.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Betaproteobacteria

Order: Burkholderiales

Family: Oxalobacteraceae

Genus: Rugamonas

Species: Rugamonas brunnea

NCBI ID

2758569

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/042/345/GCA_014042345.1_ASM1404234v1

File for sequence-based predictions:
GCA_014042345.1_ASM1404234v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Rugamonas brunnea is a lesser-known bacterium that has been isolated from various environmental sources, including soil and water. While its clinical implications are not as extensively documented as those of more prominent pathogens, there are some notable aspects to consider. Role in Human Health: Rugamonas brunnea is not typically associated with human infections; however, its presence in the environment suggests a potential role in the microbial ecosystem. It may contribute to nutrient cycling and the degradation of organic matter, which can indirectly support human health by maintaining environmental balance. Disease Associations: Currently, there are no well-documented associations between Rugamonas brunnea and specific diseases in humans. Its pathogenic potential remains largely unexplored, and it is not recognized as a significant human pathogen. Pathogenicity: There is limited information regarding the pathogenicity of Rugamonas brunnea. It has not been implicated in any known outbreaks or infections, and its virulence factors, if any exist, have not been characterized. Antimicrobial Resistance: As of now, there is no documented evidence of antimicrobial resistance in Rugamonas brunnea. However, the study of environmental bacteria is crucial, as they can harbor resistance genes that may be transferred to more pathogenic organisms. Medical Applications: There are no known medical applications of Rugamonas brunnea at this time. Its potential use in biotechnology or as a probiotic has not been explored in the literature. In summary, while Rugamonas brunnea is an interesting organism from an ecological perspective, its clinical relevance remains minimal, with no significant associations with infections, disease, or immune response documented in current scientific literature.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Rugamonas brunnea is a fascinating microorganism primarily associated with freshwater ecosystems and sedimentary environments. This organism thrives in nutrient-rich wetlands and lakes, where it plays a crucial role in the decomposition of organic matter. Its presence is often linked to the breakdown of complex organic compounds, contributing to nutrient cycling within these habitats. In these freshwater biomes, Rugamonas brunnea exhibits a remarkable ability to adapt to varying levels of oxygen, making it a key player in both aerobic and anaerobic conditions. This adaptability allows it to flourish in diverse environments, from the surface waters to the deeper sediment layers, where it interacts with other microorganisms and contributes to the overall health of the ecosystem. Moreover, Rugamonas brunnea is known to engage in symbiotic relationships with other microbial communities, enhancing nutrient availability and promoting biodiversity. Its role in biofilm formation on submerged surfaces further underscores its importance in maintaining the ecological balance within its habitat. Overall, Rugamonas brunnea exemplifies the intricate connections within freshwater biomes, highlighting its significance in ecological processes and environmental health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Rugamonas brunnea has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and biofuel production. This organism is known for its ability to thrive in diverse environments, which makes it a candidate for biodegradation processes, where it can break down complex organic materials, including pollutants and waste products. In the realm of biotechnology, Rugamonas brunnea can be utilized in fermentation processes to produce valuable metabolites. These metabolites can serve as precursors for pharmaceuticals or as bioactive compounds in food and cosmetic industries. The organism's enzymatic activity is particularly noteworthy, as it can produce enzymes that facilitate the breakdown of lignocellulosic biomass, making it a potential player in the production of biofuels from agricultural waste. Moreover, in waste management, Rugamonas brunnea can contribute to the treatment of wastewater by degrading organic pollutants, thus improving water quality. Its role in waste treatment processes highlights its importance in environmental sustainability efforts. Overall, the versatility of Rugamonas brunnea in these applications underscores its significance in advancing industrial biotechnology and promoting eco-friendly practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	mistralai/mistral-7b-instruct	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	microsoft/wizardlm-2-8x22b	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openai/gpt-4	openai/gpt-4	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro
Motility	TRUE	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain variable ✗	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain positive ✗	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	facultatively anaerobic ✗	N/A	aerotolerant ✗	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	anaerobic ✗	anaerobic ✗	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	N/A	false	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	true	true	false	false	false	false
Biofilm formation	N/A	true	true	true	true	true	true	true	false	true	true	true	true	true	true	false	false	true	true	false	false	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	true	false	false	false	false	false	true	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	true	false	true	true	true	false	true	true	false	false	false	false	true	true	true	true	false	false	true	true	false	false	true	true
Host association	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	N/A	beta ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha ✗	alpha ✗	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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