Nocardiopsis coralli

General Information

Nocardiopsis coralli is a fascinating microorganism that has garnered attention due to its unique ecological niche and potential biotechnological applications. This actinobacterium was originally isolated from coral reefs, which are known for their rich biodiversity and complex ecosystems. The ability of Nocardiopsis coralli to thrive in such environments suggests that it possesses unique metabolic pathways and stress resistance mechanisms that could be of significant interest to researchers. One of the most intriguing aspects of Nocardiopsis coralli is its potential for producing novel bioactive compounds. Actinobacteria are well-known for their secondary metabolite production, and Nocardiopsis coralli is no exception. It has been found to produce a variety of enzymes and antimicrobial agents, which could be harnessed for pharmaceutical and industrial applications. The discovery of new antibiotics and enzymes from this organism could play a crucial role in addressing antibiotic resistance and developing new biocatalysts. Additionally, Nocardiopsis coralli has shown promise in bioremediation efforts. Its ability to degrade complex organic compounds makes it a valuable candidate for cleaning up polluted environments, particularly in marine settings. This capability is particularly important given the increasing levels of pollution in oceanic ecosystems. In summary, Nocardiopsis coralli stands out due to its unique habitat, potential for producing bioactive compounds, and applications in bioremediation. These characteristics make it a valuable subject for further research and biotechnological exploration.

Nocardiopsis coralli is a fascinating actinobacterium that was first isolated from marine environments, specifically from coral reefs. This organism is particularly interesting due to its unique ecological niche, thriving in the complex and often harsh conditions of marine ecosystems. Its ability to adapt to such environments makes it a valuable subject for research into marine microbiology and ecology. One of the standout features of Nocardiopsis coralli is its potential for producing bioactive compounds. Actinobacteria are renowned for their ability to synthesize a wide array of secondary metabolites, many of which have significant pharmaceutical applications. Research has indicated that Nocardiopsis coralli may produce novel antibiotics and other bioactive substances that could be crucial in the fight against antibiotic-resistant pathogens. Additionally, this microorganism is of interest for its biotechnological applications. The enzymes produced by Nocardiopsis coralli could be harnessed for various industrial processes, including bioremediation, where they may help in the degradation of pollutants in marine environments. This capability highlights the organism's potential role in environmental sustainability efforts. Furthermore, the study of Nocardiopsis coralli contributes to our understanding of marine biodiversity and the evolutionary adaptations of microorganisms in extreme habitats. As researchers continue to explore the genetic and metabolic pathways of this organism, it may reveal insights into the evolutionary pressures faced by marine microbes and their interactions within coral reef ecosystems. In summary, Nocardiopsis coralli stands out not only for its ecological significance but also for its potential contributions to medicine and biotechnology, making it a valuable organism for ongoing scientific research.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Streptosporangiales

Family: Nocardiopsaceae

Genus: Nocardiopsis

Species: Nocardiopsis coralli

NCBI ID

2772213

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/892/575/GCA_014892575.1_ASM1489257v1

File for sequence-based predictions:
GCA_014892575.1_ASM1489257v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Nocardiopsis coralli is a member of the actinobacteria group and has garnered attention for its potential clinical implications. It is primarily known for its role in the marine environment, particularly in coral reefs, where it contributes to the degradation of organic matter. However, its relevance extends to human health due to its potential pathogenicity. Infections caused by Nocardiopsis coralli are rare but can occur, particularly in immunocompromised individuals. These infections may present as pulmonary infections or cutaneous lesions, highlighting the organism's ability to invade human tissues under certain conditions. One of the notable aspects of Nocardiopsis coralli is its production of bioactive compounds, which have been studied for their antimicrobial and antitumor properties. This suggests a potential for therapeutic applications, including the development of new antibiotics or anticancer agents. However, the clinical use of these compounds is still under investigation. In terms of antimicrobial resistance, there is limited data available, but like many actinobacteria, Nocardiopsis coralli may possess intrinsic resistance mechanisms that could complicate treatment options. Understanding its resistance patterns is crucial for managing infections effectively. Overall, while Nocardiopsis coralli is not a common pathogen, its interactions with human health, potential for disease, and therapeutic applications warrant further research to fully elucidate its clinical significance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Nocardiopsis coralli is a filamentous bacterium commonly found in marine environments, particularly associated with coral reefs. This organism thrives in tropical and subtropical marine ecosystems, where it plays a significant role in the health and sustainability of coral habitats. Its presence is often linked to the microbial communities that inhabit the surfaces of corals, contributing to the overall biodiversity of these ecosystems. In these coral reef environments, Nocardiopsis coralli engages in nutrient cycling, breaking down organic matter and facilitating the availability of essential nutrients for other marine organisms. This bacterium is known for its ability to produce bioactive compounds, which can have antimicrobial properties, thus helping to protect corals from pathogenic organisms. Furthermore, Nocardiopsis coralli exhibits a form of symbiosis with corals, where it may enhance the resilience of coral species against environmental stressors such as temperature fluctuations and pollution. Its adaptability to varying salinity and temperature conditions allows it to thrive in the dynamic marine environments of coral reefs, making it a crucial player in maintaining the ecological balance. Overall, the ecological niche of Nocardiopsis coralli is characterized by its role as a decomposer and protective agent within the coral reef biome, highlighting its importance in marine biodiversity and ecosystem health.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Nocardiopsis coralli has shown significant potential in various industrial applications due to its unique metabolic capabilities. One of the most notable areas is in biotechnology, where Nocardiopsis coralli is utilized for its ability to produce a range of bioactive compounds, including antibiotics and enzymes. These compounds are crucial in the development of pharmaceuticals, particularly in the fight against antibiotic-resistant bacteria. In the realm of waste management, Nocardiopsis coralli has demonstrated effective biodegradation capabilities, particularly in the breakdown of complex organic materials. This makes it a valuable organism in the treatment of industrial waste, where it can help in the detoxification of pollutants and the recycling of nutrients. Furthermore, the organism is being explored for its role in biofuel production. Through fermentation processes, Nocardiopsis coralli can convert organic substrates into biofuels, contributing to sustainable energy solutions. Its enzymatic activity is particularly beneficial in breaking down lignocellulosic biomass, which is a key step in bioethanol production. Overall, Nocardiopsis coralli represents a versatile microorganism with applications spanning pharmaceutical development, waste treatment, and renewable energy, showcasing its importance in modern industrial biotechnology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro
Motility	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain variable ✗	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerotolerant ✗	aerotolerant ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	TRUE	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Biofilm formation	N/A	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	true	true	false	false	true	false	false	false	false	true	true	true	true	true	true	false	false	false	false	true	true	false	false	true	true	false	false
Host association	N/A	false	true	true	true	false	true	false	false	false	false	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	TRUE	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓
Hemolysis	N/A	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	coccus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	coccus	bacillus	bacillus	bacillus	bacillus

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