Pseudomonas allokribbensis

General Information

Pseudomonas allokribbensis is a fascinating microorganism belonging to the genus Pseudomonas, which is known for its metabolic diversity and ecological versatility. This species is particularly interesting due to its ability to thrive in various environmental conditions, making it a subject of study in environmental microbiology and biotechnology. One of the key characteristics of Pseudomonas allokribbensis is its potential for bioremediation. Members of the Pseudomonas genus are renowned for their ability to degrade a wide range of organic pollutants, and Pseudomonas allokribbensis is no exception. This makes it a valuable candidate for cleaning up contaminated environments, such as soil and water bodies affected by industrial waste. Additionally, Pseudomonas allokribbensis exhibits a remarkable ability to produce secondary metabolites, which can have antimicrobial properties. This trait is of significant interest in the field of medical microbiology, as it opens up possibilities for the development of new antibiotics or antifungal agents. The production of these bioactive compounds can also be harnessed in agricultural settings to protect crops from pathogenic microorganisms. From a genetic perspective, Pseudomonas allokribbensis is intriguing due to its complex regulatory networks that control gene expression in response to environmental stimuli. This adaptability is a subject of ongoing research, as understanding these regulatory mechanisms can provide insights into microbial survival strategies and lead to the development of novel biotechnological applications. In summary, Pseudomonas allokribbensis stands out due to its bioremediation potential, production of secondary metabolites, and genetic adaptability. These characteristics make it a valuable organism for research in environmental science, biotechnology, and medical microbiology.

Pseudomonas allokribbensis is a fascinating bacterium that has garnered attention due to its unique metabolic capabilities and ecological significance. This species is part of the diverse genus Pseudomonas, known for its versatility in various environments, including soil, water, and even as plant symbionts. One of the most interesting aspects of P. allokribbensis is its ability to degrade a wide range of organic compounds, making it a potential candidate for bioremediation applications. This characteristic is particularly valuable in the context of environmental cleanup, as it can help in the breakdown of pollutants and toxic substances. Another notable feature of P. allokribbensis is its production of secondary metabolites, which can have antimicrobial properties. This opens up avenues for research into natural product chemistry and the development of new antibiotics. The potential to discover novel compounds that can combat antibiotic-resistant bacteria is a significant area of interest in current microbiological research. Furthermore, P. allokribbensis has been studied for its interactions with plant roots, suggesting a role in promoting plant growth and health. This symbiotic relationship highlights its importance in agriculture and ecosystem functioning. Understanding these interactions can lead to advancements in sustainable agricultural practices, enhancing crop yields while minimizing chemical inputs. Overall, Pseudomonas allokribbensis stands out not only for its ecological roles but also for its potential applications in biotechnology and environmental science, making it a valuable organism for ongoing research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas allokribbensis

NCBI ID

2774460

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/014/863/605/GCA_014863605.1_ASM1486360v1

File for sequence-based predictions:
GCA_014863605.1_ASM1486360v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas allokribbensis is a member of the Pseudomonas genus, which is known for its environmental versatility and clinical significance. While specific studies on P. allokribbensis are limited, its close relatives, particularly Pseudomonas aeruginosa, provide insight into potential clinical implications. This organism may be associated with opportunistic infections, particularly in immunocompromised patients, and can be a significant pathogen in hospital-acquired infections. One of the notable features of Pseudomonas species is their ability to develop antimicrobial resistance. This resistance is often attributed to their intrinsic mechanisms, such as the presence of efflux pumps and biofilm formation, which can complicate treatment options. The potential for multi-drug resistance in Pseudomonas species raises concerns in clinical settings, especially in patients with chronic conditions or those undergoing invasive procedures. In terms of immune evasion, Pseudomonas species can produce various virulence factors, including exotoxins and proteases, which can disrupt host immune responses. This ability to evade the immune system contributes to their pathogenicity and persistence in the host. Furthermore, there is ongoing research into the potential use of certain Pseudomonas species in bioremediation and as probiotics, although the clinical applications of P. allokribbensis specifically remain to be fully elucidated. Understanding the ecological role and pathogenic potential of Pseudomonas allokribbensis is crucial for developing effective treatment strategies and managing infections associated with this organism.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas allokribbensis is a versatile bacterium commonly found in a variety of habitat types, particularly in soil and aquatic environments. This microorganism thrives in nutrient-rich conditions, often associated with decaying organic matter, which provides an abundant source of nutrients for its metabolic processes. Soil Biomes: In terrestrial ecosystems, Pseudomonas allokribbensis plays a crucial role in the decomposition of organic materials, contributing to nutrient cycling and soil health. Its ability to degrade complex organic compounds makes it an important player in the soil microbiome, where it interacts with other microorganisms and plants, enhancing soil fertility and structure. Aquatic Environments: In freshwater and marine ecosystems, this bacterium is often found in biofilms on surfaces such as rocks and aquatic plants. Here, it participates in nutrient cycling and can influence the availability of essential nutrients for other organisms. Its presence in these environments can also indicate the health of the ecosystem, as it is sensitive to changes in water quality. Additionally, Pseudomonas allokribbensis exhibits notable symbiotic relationships with various plant species, promoting plant growth through mechanisms such as nitrogen fixation and phytostimulation. This interaction not only benefits the plants but also enhances the overall biodiversity and stability of the ecosystem. Overall, Pseudomonas allokribbensis is an essential component of both terrestrial and aquatic biomes, contributing to ecological balance and sustainability through its diverse metabolic capabilities and interactions with other organisms.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas allokribbensis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to produce enzymes that can be harnessed in biocatalysis processes. These enzymes can facilitate chemical reactions under mild conditions, making them valuable in the production of pharmaceuticals and other fine chemicals. In the realm of waste management, Pseudomonas allokribbensis has demonstrated capabilities in biodegradation, particularly in the breakdown of complex organic pollutants. This makes it a candidate for use in bioremediation strategies aimed at cleaning up contaminated environments, such as oil spills or heavy metal-laden sites. Furthermore, this microorganism is being explored for its role in biofuel production. Its metabolic pathways can be optimized to convert waste materials into biofuels through fermentation processes, thereby contributing to sustainable energy solutions. In pharmaceutical development, the unique metabolic properties of Pseudomonas allokribbensis can be leveraged for the production of bioactive compounds, which may lead to the discovery of new drugs or therapeutic agents. The organism's ability to synthesize various secondary metabolites is particularly promising in this field. Overall, Pseudomonas allokribbensis represents a versatile tool in modern industrial applications, with its contributions spanning from enzyme production to waste treatment and beyond.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 11

LLM predicted phenotypes: 2

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	openchat/openchat-7b	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemini-flash-1.5	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	false ✗	false ✗	true ✓	true ✓	false ✗	true ✓	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	false	false	true	true	false	false
Host association	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

Back to Search