Pseudomonas cyclaminis

General Information

Pseudomonas cyclaminis is a fascinating microorganism within the genus Pseudomonas, known for its diverse metabolic capabilities and environmental versatility. This bacterium was first isolated from the roots of the cyclamen plant, which hints at its potential role in plant-microbe interactions. One of the most intriguing aspects of Pseudomonas cyclaminis is its ability to produce a variety of secondary metabolites, which can have significant implications for biocontrol and bioremediation. From a research perspective, Pseudomonas cyclaminis is particularly valuable due to its biotechnological potential. The bacterium's metabolic diversity allows it to degrade a wide range of organic compounds, making it a candidate for use in environmental cleanup efforts, such as the degradation of pollutants and waste products. Additionally, its association with plant roots suggests that it may play a role in promoting plant growth or protecting plants from pathogens, which could be harnessed in agricultural applications. Another unique feature of Pseudomonas cyclaminis is its ability to produce bioactive compounds that can inhibit the growth of other microorganisms. This antimicrobial activity is of great interest for the development of new antibiotics or biocontrol agents. The study of these compounds can provide insights into novel mechanisms of microbial inhibition and resistance. Overall, Pseudomonas cyclaminis stands out due to its environmental adaptability, metabolic versatility, and potential applications in biotechnology. Its role in plant health and its ability to produce bioactive compounds make it a valuable subject for ongoing and future research.

Pseudomonas cyclaminis is a fascinating bacterium primarily known for its unique ability to thrive in various environmental conditions, particularly in soil and plant-associated habitats. This organism is particularly interesting due to its role in the degradation of organic compounds, which makes it valuable in bioremediation efforts. Its metabolic versatility allows it to utilize a wide range of substrates, including aromatic compounds, which are often pollutants in the environment. This characteristic positions Pseudomonas cyclaminis as a potential candidate for biotechnological applications aimed at environmental cleanup. Another notable aspect of Pseudomonas cyclaminis is its association with cyclamen plants, where it has been observed to influence plant health. This interaction highlights the bacterium's potential role in plant growth promotion and disease suppression, making it a subject of interest for agricultural research. Understanding the mechanisms behind this plant-microbe interaction could lead to innovative strategies for sustainable agriculture. Furthermore, Pseudomonas cyclaminis is part of the larger Pseudomonas genus, which is renowned for its diverse metabolic capabilities and ecological significance. Research into this species contributes to the broader understanding of microbial ecology and the roles of bacteria in nutrient cycling and ecosystem functioning. Overall, Pseudomonas cyclaminis stands out as a valuable organism for both environmental and agricultural research, with implications for bioremediation and sustainable practices.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas cyclaminis

NCBI ID

2781239

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/163/715/GCA_015163715.1_ASM1516371v1

File for sequence-based predictions:
GCA_015163715.1_ASM1516371v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas cyclaminis is a member of the Pseudomonas genus, which is known for its environmental versatility and potential pathogenicity. While Pseudomonas cyclaminis is primarily recognized for its role in plant pathology, its clinical implications in human health are less well-documented compared to other Pseudomonas species, such as Pseudomonas aeruginosa. However, it is important to consider its potential as an opportunistic pathogen, particularly in immunocompromised individuals. Infections caused by Pseudomonas species can lead to serious complications, especially in patients with underlying health conditions or those undergoing invasive procedures. The organism may exhibit antimicrobial resistance mechanisms, which are characteristic of many Pseudomonas species. This resistance can complicate treatment options and lead to persistent infections. The ability of Pseudomonas cyclaminis to form biofilms may also contribute to its pathogenicity, as biofilms can protect the bacteria from both the host immune response and antibiotic treatment. While there is limited direct evidence linking Pseudomonas cyclaminis to specific human diseases, its close relation to other clinically significant Pseudomonas species suggests that it could potentially be involved in opportunistic infections, particularly in settings where it is exposed to human hosts. Further research is needed to fully elucidate its role in human health and disease, including any potential immune evasion strategies it may employ. Overall, the clinical relevance of Pseudomonas cyclaminis remains an area of interest, particularly in the context of emerging antimicrobial resistance and the need for effective therapeutic strategies.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas cyclaminis has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Pseudomonas cyclaminis is utilized for its ability to degrade complex organic compounds, making it valuable in biodegradation processes. This capability allows it to be employed in waste management, particularly in the treatment of wastewater and contaminated soils, where it can break down pollutants and reduce environmental impact. In the realm of biofuel production, Pseudomonas cyclaminis can be involved in the fermentation of organic materials, converting them into biofuels such as ethanol or biodiesel. This process not only contributes to renewable energy sources but also aids in the reduction of waste materials. Furthermore, the organism has potential applications in pharmaceutical development due to its unique metabolic pathways, which can be harnessed for the production of valuable biochemicals and pharmaceuticals. The enzymatic activities of Pseudomonas cyclaminis can be exploited in enzyme production, leading to the development of novel drugs or therapeutic agents. Overall, Pseudomonas cyclaminis demonstrates a versatile profile that can be leveraged across multiple industries, particularly in waste treatment, biodegradation, and biofuel production, making it a significant organism in the field of industrial microbiology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	false	true	false	false	false	true	false	false	false	false	false	false	false	false	true	true	true	true	false	false	false	false	false	false	true	true
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	true	true	true	false	true	false	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Host association	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	N/A	true	true	true	false	true	true	true	false	true	true	true	false	false	true	true	false	false	false	false	false	false	true	true	false	false	false	false
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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