Microbacterium atlanticum

General Information

Microbacterium atlanticum is a fascinating microorganism that has garnered attention due to its unique habitat and potential applications. This bacterium was first isolated from deep-sea sediments in the Atlantic Ocean, which makes it particularly interesting for studies related to extremophiles and deep-sea microbiology. The ability of M. atlanticum to thrive in such a high-pressure, low-temperature environment provides valuable insights into the adaptability and resilience of life in extreme conditions. One of the key characteristics of Microbacterium atlanticum is its potential for biotechnological applications. The enzymes produced by this bacterium are of particular interest because they may possess unique properties that are stable and functional under extreme conditions, which can be highly valuable in industrial processes that require robust and resilient biocatalysts. Additionally, M. atlanticum has been studied for its role in the biogeochemical cycles of the deep-sea ecosystem. Its metabolic activities contribute to the breakdown and recycling of organic matter in the ocean's depths, playing a crucial role in the carbon cycle. This makes it an important organism for understanding the ecological dynamics of deep-sea environments. In summary, Microbacterium atlanticum is notable for its extremophilic nature, potential biotechnological applications, and its role in deep-sea ecological processes. These characteristics make it a valuable subject for ongoing research in microbiology, biotechnology, and environmental science.

Microbacterium atlanticum is a fascinating species of bacteria that belongs to the genus Microbacterium, which is known for its diverse ecological roles and biotechnological potential. This organism was first isolated from marine environments, specifically from the Atlantic Ocean, which highlights its adaptation to saline conditions and its role in marine ecosystems. One of the most interesting aspects of M. atlanticum is its ability to degrade complex organic compounds, making it a valuable candidate for bioremediation efforts, particularly in coastal areas affected by pollution. The metabolic versatility of M. atlanticum allows it to utilize a variety of substrates, which is essential for its survival in nutrient-limited environments. This characteristic not only contributes to its ecological significance but also opens avenues for research into its enzymatic pathways, which could lead to the discovery of novel enzymes with industrial applications. Furthermore, the organism's potential in biotechnological applications, such as the production of bioactive compounds, makes it a subject of interest in pharmaceutical research. In addition to its environmental and industrial relevance, Microbacterium atlanticum serves as a model organism for studying microbial adaptation to extreme conditions, providing insights into the evolutionary processes that enable survival in diverse habitats. Overall, the unique characteristics of M. atlanticum underscore its importance in both ecological and applied microbiology, making it a valuable organism for ongoing research.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Micrococcales

Family: Microbacteriaceae

Genus: Microbacterium

Species: Microbacterium atlanticum

NCBI ID

2782168

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/015/277/815/GCA_015277815.1_ASM1527781v1

File for sequence-based predictions:
GCA_015277815.1_ASM1527781v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Microbacterium atlanticum is a member of the genus Microbacterium, which is known for its environmental presence and potential clinical significance. While M. atlanticum is primarily recognized for its role in environmental microbiology, its clinical implications are emerging, particularly in relation to human health. Clinical associations with M. atlanticum have been noted in cases of infections, especially in immunocompromised patients. The organism has been isolated from various clinical specimens, indicating its potential as an opportunistic pathogen. One of the notable aspects of M. atlanticum is its pathogenicity, which may be linked to its ability to survive in harsh environments and its potential to evade the immune response of the host. This characteristic raises concerns about its role in nosocomial infections, particularly in patients with underlying health conditions. Furthermore, there is a growing interest in the antimicrobial resistance patterns exhibited by M. atlanticum. Reports suggest that strains may show resistance to multiple antibiotics, complicating treatment options for infections caused by this organism. This resistance underscores the importance of ongoing surveillance and research to understand the mechanisms behind its resistance and to develop effective therapeutic strategies. In terms of medical applications, while M. atlanticum is not widely recognized for therapeutic use, its relatives in the Microbacterium genus are being studied for potential benefits in probiotics and other health-related applications. However, more research is needed to fully elucidate the clinical relevance and potential benefits of M. atlanticum in human health. Overall, the organism represents a complex interplay between environmental microbiology and clinical medicine, warranting further investigation into its role in human disease and health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Microbacterium atlanticum is a species of bacteria that is primarily associated with marine environments, particularly in the Atlantic Ocean. This microorganism thrives in marine ecosystems, where it plays a significant role in nutrient cycling and organic matter decomposition. Its presence is often linked to coastal waters and sediments, where it contributes to the breakdown of complex organic compounds, thus facilitating nutrient availability for other marine organisms. In these marine habitats, M. atlanticum exhibits notable interactions with its surroundings, including potential symbiotic relationships with other microorganisms and marine life. It may engage in mutualistic interactions with phytoplankton, aiding in the degradation of organic materials that can enhance nutrient uptake for these primary producers. Furthermore, Microbacterium atlanticum demonstrates remarkable environmental adaptability, allowing it to thrive in varying conditions such as changes in salinity and temperature. This adaptability is crucial for its survival in the dynamic and often fluctuating conditions of the marine biome. Overall, M. atlanticum is an important player in the marine ecosystem, contributing to the health and stability of its environment through its roles in decomposition and nutrient cycling.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Microbacterium atlanticum has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where it is utilized for its ability to produce enzymes that can be harnessed in various biochemical processes. For instance, its enzymatic activity can be applied in biodegradation processes, helping to break down complex organic materials, which is particularly useful in waste management and environmental remediation efforts. In the realm of waste management, Microbacterium atlanticum has been studied for its capacity to degrade pollutants, making it a candidate for bioremediation strategies aimed at cleaning up contaminated sites. This includes the breakdown of hydrocarbons and other toxic compounds, thereby contributing to a cleaner environment. Furthermore, there is potential for this microorganism in biofuel production. Its metabolic pathways can be explored for the conversion of organic waste into biofuels through fermentation processes, which can lead to sustainable energy solutions. In pharmaceutical development, Microbacterium atlanticum may also play a role due to its unique metabolic products, which could be investigated for their therapeutic properties. The exploration of its secondary metabolites could lead to the discovery of new drugs or health supplements. Overall, Microbacterium atlanticum presents a versatile profile with applications spanning biotechnology, waste management, biofuel production, and pharmaceutical development, making it a valuable organism in various industrial sectors.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	google/gemini-pro	google/gemini-pro
Motility	FALSE	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	false	true	true	true	true	false	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	false	true	true	false	true	false	false	false	false	false	false	false	true	true	true	true	true	true	true	true	true	true	false	false	true	true
Host association	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	N/A	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus	coccus	coccus	bacillus	bacillus	coccus	coccus	bacillus	bacillus	bacillus	bacillus	bacillus	bacillus

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