Streptomyces silvae

General Information

Streptomyces silvae is a fascinating microorganism belonging to the genus Streptomyces, which is renowned for its prolific production of secondary metabolites. One of the most intriguing aspects of S. silvae is its potential for producing novel antibiotics and other bioactive compounds. This makes it a valuable subject for pharmaceutical research, especially in the ongoing quest to discover new treatments for antibiotic-resistant infections. Streptomyces species are well-known for their complex life cycle, which includes the formation of a mycelium and spore chains, contributing to their ability to thrive in diverse environments. S. silvae was originally isolated from forest soil, indicating its adaptability to rich, organic environments. This ecological niche suggests that S. silvae may possess unique metabolic pathways and enzymes that could be harnessed for biotechnological applications. Another notable feature of S. silvae is its genetic potential. The genome of Streptomyces species typically harbors a large number of gene clusters responsible for the biosynthesis of secondary metabolites. This genetic richness provides a treasure trove for researchers aiming to discover new natural products with potential applications in medicine, agriculture, and industry. In summary, Streptomyces silvae stands out due to its ability to produce novel bioactive compounds, its adaptability to diverse environments, and its genetic potential for secondary metabolite biosynthesis. These characteristics make it a highly valuable organism for scientific research and biotechnological innovation.

Streptomyces silvae is a fascinating actinobacterium known for its remarkable ability to produce a diverse array of bioactive compounds, including antibiotics and antifungal agents. This species is particularly interesting due to its ecological role in soil environments, where it contributes to the decomposition of organic matter and the cycling of nutrients. The unique metabolic pathways of Streptomyces silvae allow it to synthesize secondary metabolites that have significant pharmaceutical potential, making it a valuable organism for drug discovery and development. One of the standout features of Streptomyces silvae is its ability to thrive in forest ecosystems, which has led to its classification as a forest-dwelling species. This ecological niche not only influences its metabolic capabilities but also enhances its potential for producing novel compounds that may not be found in other environments. Research into Streptomyces silvae has revealed its potential in biocontrol applications, particularly in agriculture, where its metabolites can be used to combat plant pathogens. Furthermore, the genomic analysis of Streptomyces silvae has provided insights into its genetic makeup, revealing clusters of genes responsible for the biosynthesis of various natural products. This genomic information is invaluable for biotechnological applications, as it can guide researchers in the manipulation of these pathways to enhance the production of desired compounds. Overall, Streptomyces silvae stands out as a promising candidate for further research in the fields of microbiology, pharmacology, and environmental science, highlighting its importance in both natural ecosystems and potential industrial applications.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Kitasatosporales

Family: Streptomycetaceae

Genus: Streptomyces

Species: Streptomyces silvae

NCBI ID

2803812

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/036/898/485/GCF_036898485.1_ASM3689848v1

File for sequence-based predictions:
GCF_036898485.1_ASM3689848v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Streptomyces silvae is a member of the genus Streptomyces, which is known for its significant role in the production of antibiotics and other bioactive compounds. While Streptomyces silvae itself has not been extensively studied in clinical settings, its relatives are well-documented for their contributions to human health and disease. Antibiotic production is one of the most notable aspects of this genus, with many species being utilized in the development of antimicrobial agents that combat various bacterial infections. In terms of pathogenicity, Streptomyces species are generally considered non-pathogenic; however, they can occasionally be implicated in opportunistic infections, particularly in immunocompromised individuals. The potential for immune evasion strategies, while not well-characterized for Streptomyces silvae, is a topic of interest given the complex interactions between soil-dwelling actinomycetes and the human immune system. Moreover, the role of Streptomyces species in the human microbiome is an area of ongoing research, with implications for probiotic applications and the maintenance of gut health. The production of secondary metabolites by these organisms may influence microbial diversity and immune responses in the gut. In summary, while Streptomyces silvae may not have direct clinical implications documented in the literature, its genus is crucial for antibiotic discovery and has potential roles in human health through its interactions with the microbiome and immune system.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Streptomyces silvae is a species of actinobacteria commonly found in forest ecosystems and soil environments. This microorganism thrives in nutrient-rich soils that are often associated with decaying organic matter, such as leaf litter and decomposing wood. Its presence is particularly notable in temperate forests, where it plays a crucial role in the decomposition process, breaking down complex organic compounds and recycling nutrients back into the soil. In these forest biomes, Streptomyces silvae engages in symbiotic relationships with various plants, promoting plant health by enhancing nutrient availability and suppressing soil-borne pathogens. This interaction is vital for maintaining the health of the ecosystem, as it contributes to the overall biodiversity and stability of the forest environment. Additionally, Streptomyces silvae is known for its ability to produce a variety of bioactive compounds, which can inhibit the growth of competing microorganisms. This characteristic not only aids in its survival but also influences the microbial community structure within its habitat. The adaptability of Streptomyces silvae to varying soil conditions and its role in nutrient cycling underscore its importance in terrestrial ecosystems, particularly in forest biomes where it contributes to the intricate web of life.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Streptomyces silvae is known for its significant contributions to various industrial applications, particularly in the fields of biotechnology, pharmaceutical development, and waste management. This actinobacterium is recognized for its ability to produce a wide range of bioactive compounds, including antibiotics and enzymes, which are crucial in the pharmaceutical industry. For instance, the fermentation processes involving Streptomyces silvae can lead to the production of novel antimicrobial agents that are effective against resistant strains of bacteria. In the realm of biotechnology, Streptomyces silvae is utilized for its enzymatic activities, particularly in the production of enzymes that can be applied in various industrial processes such as biocatalysis and bioremediation. The organism's ability to degrade complex organic materials makes it a valuable asset in waste treatment applications, where it can help in the breakdown of pollutants and organic waste, thus contributing to environmental sustainability. Moreover, Streptomyces silvae has shown potential in biofuel production through its metabolic pathways that can convert biomass into biofuels. The organism's role in biodegradation processes allows for the efficient conversion of lignocellulosic materials into fermentable sugars, which can subsequently be transformed into bioethanol or other biofuels. Overall, Streptomyces silvae exemplifies the versatility of microorganisms in industrial applications, showcasing its importance in enhancing productivity and sustainability across multiple sectors.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	google/gemini-pro	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	openchat/openchat-7b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	openai/gpt-4	openai/gpt-4	google/gemma-7b-it	google/gemma-7b-it	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain variable ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A
Extreme environment tolerance	N/A	true	true	false	true	true	true	true	true	false	false	true	true	true	true	true	true	false	false	false	false	true	true	true	true	true	true	true	true
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	false	true	true	true	true	true	false	false	false	true	true	true	true	false	false	true	true	false	false	true	true	true	true	true	true	true	true
Host association	FALSE	true ✗	false ✓	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Spore formation	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Hemolysis	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	tail	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗	bacillus ✗

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