Microbacterium neungamense

General Information

Microbacterium neungamense is a fascinating microorganism that belongs to the genus Microbacterium. This bacterium was first isolated from soil in Korea, which highlights its ecological significance and potential for biotechnological applications. One of the most intriguing aspects of M. neungamense is its ability to thrive in diverse environmental conditions, which makes it a subject of interest for studies on microbial adaptation and resilience. Biotechnological Potential: Microbacterium neungamense has shown promise in the field of bioremediation. Its ability to degrade various pollutants, including aromatic compounds, suggests that it could be used to clean up contaminated environments. This capability is particularly valuable in efforts to mitigate the impact of industrial pollution. Enzymatic Activity: The bacterium is also noted for its production of unique enzymes that could have industrial applications. These enzymes may be useful in processes such as the breakdown of complex organic materials, which is essential in industries ranging from waste management to biofuel production. Genomic Insights: The genome of M. neungamense provides valuable insights into its metabolic pathways and potential for secondary metabolite production. Researchers are particularly interested in the genes responsible for its stress response mechanisms, which could inform the development of robust microbial strains for various applications. In summary, Microbacterium neungamense is a microorganism of significant interest due to its environmental resilience, bioremediation potential, and unique enzymatic properties. Its study not only enhances our understanding of microbial ecology but also opens up new avenues for industrial and environmental biotechnology.

Microbacterium neungamense is a fascinating species of bacteria that belongs to the genus Microbacterium, which is known for its diverse ecological roles and biotechnological potential. This organism was first isolated from a soil sample in South Korea, highlighting its environmental adaptability and the rich microbial diversity found in soil ecosystems. One of the most interesting aspects of M. neungamense is its ability to degrade various organic compounds, making it a valuable candidate for bioremediation efforts. This characteristic positions it as a potential agent for the cleanup of contaminated environments, particularly those affected by pollutants such as hydrocarbons and other organic waste. Additionally, Microbacterium neungamense has been studied for its production of bioactive compounds, which may have implications in pharmaceuticals and agriculture. The metabolic pathways utilized by this bacterium can lead to the synthesis of novel secondary metabolites, which could be harnessed for their antimicrobial or antifungal properties. Furthermore, the organism's genetic and biochemical characteristics are of interest to researchers exploring microbial diversity and evolution. Its unique adaptations to various environmental conditions provide insights into the mechanisms of survival and competition among soil microorganisms. In summary, Microbacterium neungamense stands out due to its ecological significance, potential applications in bioremediation, and the production of bioactive compounds, making it a valuable subject for ongoing research in microbiology and environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Micrococcales

Family: Microbacteriaceae

Genus: Microbacterium

Species: Microbacterium neungamense

NCBI ID

2810535

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/971/095/GCF_024971095.1_ASM2497109v1

File for sequence-based predictions:
GCF_024971095.1_ASM2497109v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Microbacterium neungamense is a member of the genus Microbacterium, which is known for its environmental presence and potential clinical significance. This organism has been associated with various infections, particularly in immunocompromised patients. Clinical implications of Microbacterium neungamense include its role in opportunistic infections, such as skin and soft tissue infections, and its potential to cause pneumonia in susceptible individuals. The organism's pathogenicity is attributed to its ability to evade the immune response, which may involve mechanisms such as biofilm formation and the production of enzymes that degrade host tissues. Furthermore, there are concerns regarding antimicrobial resistance in Microbacterium neungamense, as some strains have shown resistance to commonly used antibiotics, complicating treatment options. This resistance underscores the importance of ongoing surveillance and susceptibility testing in clinical settings. While Microbacterium neungamense is not widely recognized as a probiotic or therapeutic agent, its presence in the human microbiome raises questions about its role in health and disease. Understanding the interactions between Microbacterium neungamense and the human body is crucial for developing effective management strategies for infections associated with this organism. Overall, the clinical relevance of Microbacterium neungamense highlights the need for further research to elucidate its pathogenic mechanisms and potential implications in human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Microbacterium neungamense is a species of bacteria that is primarily associated with soil environments and freshwater ecosystems. This microorganism thrives in nutrient-rich substrates, often found in areas with high organic matter content, such as decaying plant material and compost. Its ability to degrade complex organic compounds makes it an important player in the nutrient cycling process within these biomes. In soil ecosystems, M. neungamense contributes to the breakdown of organic matter, facilitating the release of essential nutrients back into the soil. This process not only supports plant growth but also enhances soil health and fertility. The bacterium often engages in symbiotic relationships with various soil-dwelling organisms, including fungi and other bacteria, which can lead to improved nutrient availability and enhanced microbial diversity. In freshwater habitats, M. neungamense can be found in environments such as ponds, streams, and wetlands. Here, it plays a crucial role in the decomposition of organic materials, contributing to the overall health of aquatic ecosystems. Its presence can influence the microbial community structure, promoting a balanced ecosystem that supports various aquatic life forms. Overall, Microbacterium neungamense is a vital component of both terrestrial and aquatic biomes, showcasing its adaptability and ecological significance through its interactions with the environment and other organisms.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Microbacterium neungamense has shown potential in various industrial applications, particularly in the fields of biotechnology, waste management, and pharmaceutical development. This organism is known for its ability to perform biodegradation, which makes it valuable in the treatment of contaminated environments. For instance, Microbacterium neungamense can effectively break down complex organic compounds, contributing to the detoxification of hazardous waste sites. In the realm of biofuel production, Microbacterium neungamense has been studied for its capacity to ferment biomass, converting it into bioethanol. This process involves fermentation, where the microorganism metabolizes sugars derived from plant materials, producing ethanol as a byproduct. This application is particularly significant in the pursuit of sustainable energy sources. Additionally, Microbacterium neungamense has demonstrated potential in pharmaceutical development through its production of bioactive compounds. These compounds can be harnessed for their antimicrobial properties, making them candidates for new antibiotic formulations. The enzymatic activity of this microorganism also plays a crucial role in various biotechnological processes, including enzyme production, which can be utilized in food processing and other industrial applications. Overall, the versatility of Microbacterium neungamense in these areas highlights its importance in advancing sustainable practices and developing innovative solutions across multiple industries.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	meta-llama/llama-3-8b-instruct:nitro	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro
Motility	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain variable ✗	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	false	true	true	true	true	true	true	true	false	false	false	false	true	true	true	true	true	true	false	false	true	true
Animal pathogenicity	N/A	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	false	true	false	false	false	false	false	false	true	true	false	false	true	true	true	true	false	false	false	false	true	true
Host association	N/A	false	false	true	false	true	false	true	true	false	false	false	false	false	false	false	false	false	false	true	true	true	true	false	false	true	true	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓

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