Pseudomonas alliivorans

General Information

Pseudomonas alliivorans is a fascinating microorganism primarily due to its unique ability to degrade sulfur-containing compounds, particularly those found in garlic. This characteristic makes it particularly interesting for applications in bioremediation and industrial processes where the breakdown of sulfur compounds is necessary. One of the key characteristics of Pseudomonas alliivorans is its metabolic versatility. It can utilize a wide range of organic compounds as carbon sources, which underscores its potential in various environmental and industrial applications. This metabolic flexibility is a hallmark of the Pseudomonas genus, but P. alliivorans stands out due to its specific enzymatic pathways that allow it to thrive in sulfur-rich environments. From a research perspective, Pseudomonas alliivorans is valuable for studying the mechanisms of sulfur metabolism. Understanding these pathways can lead to the development of new biotechnological tools for managing sulfur emissions and treating sulfur-laden waste. Additionally, the enzymes involved in sulfur degradation could be harnessed for biocatalysis in synthetic chemistry, offering environmentally friendly alternatives to traditional chemical processes. Another interesting aspect of Pseudomonas alliivorans is its potential role in agriculture. By breaking down sulfur compounds in the soil, it could help in managing soil health and fertility, particularly in garlic and onion farming where sulfur compounds are prevalent. This could lead to more sustainable agricultural practices and improved crop yields. In summary, Pseudomonas alliivorans is a microorganism of significant interest due to its unique sulfur-degrading capabilities, metabolic versatility, and potential applications in bioremediation, industrial processes, and sustainable agriculture. Its study not only advances our understanding of microbial metabolism but also opens up new avenues for practical applications in various fields.

Pseudomonas alliivorans is a fascinating bacterium that has garnered attention due to its unique metabolic capabilities and ecological significance. This species is known for its ability to degrade a variety of organic compounds, making it a valuable player in bioremediation processes. Its capacity to break down complex pollutants, including those found in agricultural runoff and industrial waste, positions it as a potential agent for environmental cleanup efforts. One of the most interesting aspects of Pseudomonas alliivorans is its association with plants. It has been observed to promote plant growth, which can be attributed to its production of phytohormones and other beneficial metabolites. This characteristic not only enhances agricultural productivity but also contributes to sustainable farming practices by reducing the need for chemical fertilizers. Furthermore, Pseudomonas alliivorans exhibits a remarkable ability to thrive in diverse environments, from soil to aquatic systems. This adaptability is indicative of its evolutionary success and underscores its role in various ecological niches. The organism's genetic diversity also makes it a subject of interest for researchers studying microbial evolution and adaptation. In summary, Pseudomonas alliivorans stands out due to its bioremediation potential, plant growth-promoting properties, and ecological versatility. These traits not only make it a subject of scientific inquiry but also highlight its importance in addressing environmental challenges and enhancing agricultural sustainability.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas alliivorans

NCBI ID

2810613

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/584/185/GCF_024584185.1_ASM2458418v1

File for sequence-based predictions:
GCF_024584185.1_ASM2458418v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas alliivorans is a member of the Pseudomonas genus, which is known for its environmental versatility and potential pathogenicity. While P. alliivorans is not as widely studied as other Pseudomonas species, it has been associated with various clinical implications. Clinical relevance includes its potential role in infections particularly in immunocompromised patients, where it may act as an opportunistic pathogen. It has been isolated from clinical specimens, indicating its ability to colonize human tissues and possibly contribute to nosocomial infections. One of the significant concerns regarding P. alliivorans is its antimicrobial resistance. Like many Pseudomonas species, it possesses intrinsic resistance mechanisms to multiple classes of antibiotics, which complicates treatment options. This resistance is often attributed to the presence of efflux pumps and the ability to form biofilms, which enhance its survival in hostile environments, including medical devices. In terms of immune evasion, P. alliivorans may utilize various strategies to avoid detection and destruction by the host immune system, although specific mechanisms require further investigation. Its ability to adapt to different environments and resist antimicrobial agents makes it a notable organism in clinical microbiology. While there are no widely recognized medical applications of P. alliivorans as a probiotic or therapeutic agent, understanding its pathogenic potential is crucial for infection control and management in healthcare settings. Continued research is necessary to fully elucidate its role in human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas alliivorans is a versatile bacterium commonly found in various habitat types that include both terrestrial and aquatic environments. This microorganism thrives particularly well in marine ecosystems, where it plays a crucial role in the degradation of organic matter and the cycling of nutrients. Its presence is often associated with coastal waters and sediments, where it contributes to the breakdown of pollutants and organic compounds, thus enhancing the overall health of the ecosystem. In addition to its role in nutrient cycling, Pseudomonas alliivorans exhibits notable interactions with its surroundings. It is known for its ability to form biofilms, which are communities of microorganisms that adhere to surfaces in aquatic environments. These biofilms can significantly influence the biogeochemical processes in their habitats, promoting the degradation of harmful substances and supporting the growth of other microbial communities. Furthermore, this bacterium is often found in association with plant roots, where it can engage in symbiotic relationships. These interactions can enhance plant growth by improving nutrient availability and providing protection against pathogens. The adaptability of Pseudomonas alliivorans to various environmental conditions, including its resistance to certain pollutants, underscores its importance in bioremediation efforts, making it a valuable organism in the context of environmental management and sustainability. Overall, Pseudomonas alliivorans is a key player in its associated biomes, contributing to ecological balance and the health of both marine and terrestrial ecosystems.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas alliivorans has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Pseudomonas alliivorans is utilized for its ability to degrade a wide range of organic compounds, making it valuable in biodegradation processes. This capability allows it to be employed in waste management, particularly in the treatment of contaminated soils and water, where it can break down pollutants such as hydrocarbons and other toxic substances. In the realm of biofuel production, Pseudomonas alliivorans can be involved in the fermentation of organic materials, converting waste biomass into biofuels. This process not only helps in waste reduction but also contributes to sustainable energy solutions. Furthermore, the organism has been studied for its potential in pharmaceutical development. Its metabolic pathways can be harnessed for the production of valuable biochemicals and pharmaceuticals through fermentation processes, where it can produce secondary metabolites with antimicrobial properties. Overall, Pseudomonas alliivorans demonstrates a versatile profile that supports its use in various industries, particularly in waste treatment, biodegradation, and biofuel production, making it a key player in the advancement of sustainable industrial practices.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 2

Phenotype	High-quality annotation	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	anthropic/claude-3-haiku:beta	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	openchat/openchat-7b	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	openai/gpt-4o	openai/gpt-4o	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	true	true	false	true	false	true	true	false	false	false	false	false	true	true	true	true	true	true	false	false	true	true	true	true	true	true
Host association	FALSE	true ✗	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	TRUE	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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