Pseudoclavibacter triregionum

General Information

Pseudoclavibacter triregionum is a fascinating microorganism belonging to the genus Pseudoclavibacter. This bacterium is particularly interesting due to its unique ecological niche and potential applications in biotechnology. One of the most notable characteristics of Pseudoclavibacter triregionum is its ability to thrive in diverse environments, which suggests a high level of adaptability and resilience. This adaptability makes it a subject of interest for studies on microbial ecology and environmental microbiology. From a biotechnological perspective, Pseudoclavibacter triregionum has shown potential in the bioremediation of contaminated environments. Its metabolic pathways enable it to degrade various pollutants, making it a valuable candidate for cleaning up environmental contaminants. Additionally, its ability to produce certain enzymes and bioactive compounds could be harnessed for industrial applications, including the production of pharmaceuticals and biofuels. Moreover, the genetic makeup of Pseudoclavibacter triregionum offers insights into the evolutionary processes that allow bacteria to adapt to different ecological niches. Studying its genome can provide valuable information on gene regulation, metabolic pathways, and resistance mechanisms, which can be applied to other fields of microbiology and biotechnology. In summary, Pseudoclavibacter triregionum is a microorganism of significant interest due to its ecological versatility, bioremediation potential, and biotechnological applications. Its study not only enhances our understanding of microbial life but also opens up new avenues for practical applications in various industries.

Pseudoclavibacter triregionum is a fascinating bacterium that belongs to the family of Actinobacteria, known for their diverse metabolic capabilities and ecological significance. This organism was first isolated from a unique environment, specifically from the rhizosphere of a plant, which highlights its potential role in plant-microbe interactions. The ability of Pseudoclavibacter triregionum to thrive in such a niche suggests it may contribute to nutrient cycling and plant health, making it a valuable subject for agricultural research. One of the most interesting aspects of Pseudoclavibacter triregionum is its production of bioactive compounds. These compounds can have significant implications in biotechnology and pharmaceuticals, particularly in the development of new antibiotics or antifungal agents. The genetic and metabolic pathways involved in the synthesis of these compounds are of great interest to researchers aiming to discover novel therapeutic agents. Additionally, Pseudoclavibacter triregionum exhibits a unique ability to degrade complex organic materials, which positions it as a potential candidate for bioremediation efforts. This characteristic could be harnessed to address environmental pollution, particularly in soils contaminated with organic pollutants. Overall, the ecological role, potential biotechnological applications, and unique metabolic capabilities of Pseudoclavibacter triregionum make it a noteworthy organism for further study in microbiology and environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Micrococcales

Family: Microbacteriaceae

Genus: Pseudoclavibacter

Species: Pseudoclavibacter triregionum

NCBI ID

2820673

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/910/822/395/GCA_910822395.1_ASM91082239v1

File for sequence-based predictions:
GCA_910822395.1_ASM91082239v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudoclavibacter triregionum is a lesser-known bacterium that has been isolated from various environmental sources, including soil and plant materials. While its direct clinical implications in human health are not extensively documented, it is important to consider its potential role in microbial ecology and pathogenicity in specific contexts. There is limited evidence suggesting that members of the genus Clavibacter, to which Pseudoclavibacter is related, can be associated with plant diseases, which may indirectly affect human health through food supply chains. Infections caused by related species have been noted, particularly in agricultural settings, where they can lead to crop losses and subsequent economic impacts. Furthermore, the potential for antimicrobial resistance in environmental bacteria raises concerns about their role in the spread of resistance genes to more pathogenic organisms. As of now, there are no well-documented cases of Pseudoclavibacter triregionum being directly implicated in human infections or disease, but ongoing research into environmental microbiomes may reveal more about its interactions with human health and disease in the future.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudoclavibacter triregionum is a bacterium commonly associated with various soil environments and plant-associated habitats. This microorganism thrives particularly in arid and semi-arid regions, where it plays a crucial role in nutrient cycling and soil health. Its presence is often linked to the degradation of organic matter, contributing to the mineralization process that releases essential nutrients back into the soil ecosystem. In these soil biomes, Pseudoclavibacter triregionum exhibits notable interactions with plant roots, where it can establish a form of symbiosis. This relationship enhances the plants' nutrient uptake, particularly in nutrient-poor soils, thereby promoting plant growth and resilience in challenging environments. The bacterium's ability to adapt to varying moisture levels and nutrient availability makes it a vital component of the microbial community in these habitats. Additionally, Pseudoclavibacter triregionum is often found in association with decaying plant material, where it contributes to the decomposition process. This not only aids in the recycling of nutrients but also supports the overall health of the ecosystem by fostering a diverse microbial community. Its role in biodegradation highlights its importance in maintaining ecological balance and promoting soil fertility in its native habitats.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudoclavibacter triregionum has shown potential in various industrial applications, particularly in the fields of biotechnology and waste management. This organism is known for its ability to participate in biodegradation, where it can break down complex organic materials, making it valuable in the treatment of waste and the remediation of contaminated environments. Its enzymatic activity allows it to degrade pollutants, thus contributing to cleaner ecosystems. In the realm of biofuel production, Pseudoclavibacter triregionum may play a role in the fermentation processes that convert biomass into biofuels. By utilizing its metabolic pathways, this microorganism can help in the efficient conversion of agricultural waste into renewable energy sources, thereby supporting sustainable energy initiatives. Furthermore, there is potential for Pseudoclavibacter triregionum in pharmaceutical development. Its unique metabolic capabilities could be harnessed for the production of bioactive compounds, which may lead to the discovery of new drugs or therapeutic agents. The organism's ability to produce specific enzymes can also be explored for use in enzyme production, which is crucial in various industrial processes, including food processing and biocatalysis. Overall, Pseudoclavibacter triregionum represents a promising candidate for advancing technologies in waste management, biofuel production, and pharmaceutical development, showcasing its versatility and importance in modern industrial applications.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	google/gemma-7b-it	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/gemini-pro	google/gemini-pro
Motility	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain negative ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain negative ✗	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	false	true	true	false	false	false	false	true	true	true	true	true	true	true	true	false	false	false	false	true	true
Animal pathogenicity	N/A	false	false	true	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	true	true	true	true	true	false	false	false	false	false	false	false	false	false	true	true	true	true	true	true	false	false	false	false	true	true
Host association	N/A	false	false	true	false	false	true	true	false	false	false	false	false	false	false	false	false	true	true	true	true	false	false	true	true	false	false	false	false
Plant pathogenicity	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	beta	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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