Gordonia pseudamarae

General Information

Gordonia pseudamarae is a fascinating microorganism belonging to the genus Gordonia, which is known for its diverse metabolic capabilities and environmental resilience. One of the most noteworthy characteristics of G. pseudamarae is its ability to degrade a wide range of complex organic compounds, including pollutants such as polycyclic aromatic hydrocarbons (PAHs) and rubber. This makes it a valuable candidate for bioremediation efforts aimed at cleaning up contaminated environments. Another unique feature of G. pseudamarae is its production of biosurfactants, which are surface-active substances that can reduce surface and interfacial tension. These biosurfactants have potential applications in industries ranging from oil recovery to pharmaceuticals due to their ability to emulsify hydrophobic compounds. From a research perspective, G. pseudamarae is also interesting because of its complex cell wall structure, which includes mycolic acids. These long-chain fatty acids contribute to the organism's resistance to desiccation and chemical damage, making it a robust model for studying microbial survival in harsh conditions. Additionally, the genetic makeup of G. pseudamarae has been a subject of study, revealing genes responsible for its metabolic versatility and stress resistance. Understanding these genetic pathways can provide insights into microbial adaptation and resilience, which are crucial for developing new biotechnological applications. In summary, Gordonia pseudamarae stands out due to its biodegradation capabilities, biosurfactant production, and resilience in extreme environments, making it a valuable organism for both environmental and industrial applications.

Gordonia pseudamarae is a fascinating actinobacterial species that has garnered attention due to its unique metabolic capabilities and ecological significance. This microorganism is particularly interesting because it is known for its ability to degrade a variety of complex organic compounds, including those found in industrial waste. This characteristic makes it a valuable candidate for bioremediation efforts, where it can be utilized to clean up contaminated environments, particularly those polluted with hydrocarbons and other recalcitrant substances. One of the standout features of Gordonia pseudamarae is its capacity to utilize a wide range of carbon sources, which allows it to thrive in diverse ecological niches. This metabolic versatility not only contributes to its survival in challenging environments but also positions it as a potential tool in environmental biotechnology. Additionally, Gordonia pseudamarae has been studied for its production of bioactive compounds, which may have implications in pharmaceuticals and agriculture. The organism's ability to synthesize secondary metabolites could lead to the discovery of novel antibiotics or other bioactive agents, making it a subject of interest in natural product research. Furthermore, the genomic analysis of Gordonia pseudamarae has revealed insights into its evolutionary adaptations and the genetic basis for its metabolic pathways. This information is crucial for understanding how microorganisms can be harnessed for environmental and industrial applications, highlighting the organism's role in the broader context of microbial ecology and biotechnology. Overall, Gordonia pseudamarae exemplifies the intersection of environmental science and microbiology, showcasing the potential of microorganisms in addressing contemporary ecological challenges.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Gordoniaceae

Genus: Gordonia

Species: Gordonia pseudamarae

NCBI ID

2831662

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/009/914/535/GCF_009914535.1_ASM991453v1

File for sequence-based predictions:
GCF_009914535.1_ASM991453v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia pseudamarae is a member of the Gordonia genus, which is known for its environmental resilience and ability to degrade various organic compounds. While Gordonia pseudamarae is not as widely studied as some other pathogens, it has been associated with opportunistic infections in immunocompromised patients. Its clinical relevance primarily stems from its potential to cause infections in individuals with weakened immune systems, such as those undergoing chemotherapy or with chronic diseases. One of the notable aspects of Gordonia pseudamarae is its antimicrobial resistance profile. It has shown resistance to multiple antibiotics, which complicates treatment options for infections it may cause. This resistance is particularly concerning in a clinical setting, as it can lead to prolonged hospital stays and increased healthcare costs. In terms of immune evasion, Gordonia pseudamarae may employ various strategies to survive within the host, although specific mechanisms are not well-documented. Its ability to thrive in diverse environments suggests a level of adaptability that could contribute to its pathogenic potential. Currently, there are no known medical applications such as probiotics or vaccines specifically targeting Gordonia pseudamarae. However, understanding its role in human health and disease is crucial, especially as the incidence of infections caused by non-traditional pathogens continues to rise. Further research is needed to fully elucidate its clinical implications and to develop effective therapeutic strategies.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Gordonia pseudamarae is a species of actinobacteria that is primarily associated with soil environments and wastewater treatment systems. This microorganism thrives in aerobic conditions, often found in nutrient-rich substrates where organic matter is abundant. Its ability to degrade complex organic compounds makes it a vital player in the biodegradation processes within these ecosystems. In soil biomes, Gordonia pseudamarae contributes to the cycling of nutrients by breaking down pollutants and organic waste, thus enhancing soil health and fertility. It is particularly effective in the degradation of xenobiotic compounds, which are often resistant to breakdown by other microorganisms. This capability not only aids in soil remediation but also supports the overall biodiversity of the microbial community. In wastewater treatment systems, Gordonia pseudamarae plays a crucial role in the biological treatment processes. It can form biofilms on surfaces within treatment facilities, where it helps to remove contaminants from water through its metabolic activities. This interaction with the environment highlights its importance in maintaining water quality and supporting ecosystem health. Additionally, Gordonia pseudamarae exhibits symbiotic relationships with other microorganisms, enhancing the efficiency of biodegradation processes. Its adaptability to various environmental conditions, including fluctuations in temperature and pH, allows it to thrive in diverse habitats, making it a significant organism in both natural and engineered ecosystems.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Gordonia pseudamarae has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to degrade complex organic compounds, making it valuable in waste management processes. This organism can effectively break down pollutants, including aromatic hydrocarbons, which are often found in industrial waste. Its enzymatic activity allows for the biodegradation of these harmful substances, contributing to environmental cleanup efforts. In the realm of biofuel production, Gordonia pseudamarae has been studied for its capacity to convert waste materials into usable energy sources. Through fermentation processes, it can help in the production of biofuels from organic waste, thus promoting sustainable energy solutions. Additionally, this microorganism has potential applications in pharmaceutical development. Its unique metabolic pathways can be harnessed for the production of bioactive compounds, which may lead to the discovery of new drugs or therapeutic agents. The ability of Gordonia pseudamarae to produce specific enzymes can also be explored for use in various biochemical processes, enhancing the efficiency of drug synthesis. Overall, Gordonia pseudamarae stands out as a versatile microorganism with promising applications in environmental biotechnology, renewable energy, and pharmaceutical industries, showcasing its importance in addressing contemporary industrial challenges.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-flash-1.5	google/palm-2-chat-bison-32k	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	mistralai/mistral-7b-instruct	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	openchat/openchat-7b	openchat/openchat-7b	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro	google/gemini-pro
Motility	FALSE	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	gram stain positive ✓	gram stain negative ✗	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	false	true	false	false	true	true	false	false	true	true	false	false	false	true	true	false	false	true	true	true	true
Host association	FALSE	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	gamma	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓

Back to Search