Pseudomonas asgharzadehiana

General Information

Pseudomonas asgharzadehiana is a fascinating microorganism within the diverse genus Pseudomonas. This species is particularly interesting due to its biotechnological potential and environmental adaptability. One of the most notable characteristics of P. asgharzadehiana is its ability to degrade various environmental pollutants, making it a valuable candidate for bioremediation efforts. This capability is attributed to its versatile metabolic pathways, which allow it to break down complex organic compounds that are often resistant to degradation by other microorganisms. Additionally, P. asgharzadehiana has been observed to produce a range of secondary metabolites, some of which have antimicrobial properties. These metabolites can inhibit the growth of pathogenic bacteria and fungi, suggesting potential applications in the development of new antibiotics or antifungal agents. The production of these bioactive compounds is of significant interest in pharmaceutical research, as it opens up possibilities for discovering novel drugs. From an ecological perspective, P. asgharzadehiana plays a crucial role in nutrient cycling within its native habitats. Its ability to fix nitrogen and solubilize phosphate contributes to soil fertility, supporting plant growth and maintaining ecosystem balance. This makes it a valuable organism for agricultural applications, particularly in sustainable farming practices where chemical fertilizers are minimized. In summary, Pseudomonas asgharzadehiana stands out due to its environmental resilience, bioremediation potential, and production of bioactive compounds. These attributes make it a subject of ongoing research with promising applications in environmental science, agriculture, and medicine.

Pseudomonas asgharzadehiana is a fascinating species within the Pseudomonas genus, known for its remarkable metabolic versatility and ability to thrive in diverse environments. This organism has garnered attention due to its potential applications in bioremediation, particularly in the degradation of environmental pollutants such as hydrocarbons and heavy metals. Its unique enzymatic pathways enable it to break down complex organic compounds, making it a valuable asset in efforts to clean up contaminated sites. One of the standout features of Pseudomonas asgharzadehiana is its ability to produce a variety of secondary metabolites, including antimicrobial compounds that can inhibit the growth of various pathogens. This characteristic not only highlights its ecological role but also suggests potential applications in developing new antibiotics or biocontrol agents in agriculture. Furthermore, this species exhibits a remarkable adaptability to extreme conditions, which makes it an interesting subject for studies on microbial resilience and survival strategies. Its genetic and biochemical pathways are of particular interest for researchers aiming to understand the mechanisms behind its adaptability and metabolic capabilities. Overall, Pseudomonas asgharzadehiana represents a promising area of study for both environmental and medical microbiology, with implications for sustainability and health.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas asgharzadehiana

NCBI ID

2842349

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/139/815/GCA_019139815.1_ASM1913981v1

File for sequence-based predictions:
GCA_019139815.1_ASM1913981v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas asgharzadehiana is a member of the Pseudomonas genus, which is known for its clinical significance in human health. This bacterium has been associated with various infections, particularly in immunocompromised patients. Pseudomonas species are notorious for their ability to cause nosocomial infections, including pneumonia, urinary tract infections, and bloodstream infections. The pathogenicity of Pseudomonas asgharzadehiana may be linked to its production of virulence factors such as exotoxins and biofilm formation, which enhance its ability to adhere to surfaces and evade the host's immune response. One of the critical concerns regarding Pseudomonas asgharzadehiana is its potential for antimicrobial resistance. Like many Pseudomonas species, it may exhibit resistance to multiple classes of antibiotics, complicating treatment options for infections. This resistance is often attributed to mechanisms such as efflux pumps, beta-lactamase production, and altered permeability of the bacterial cell wall. In terms of medical applications, while Pseudomonas asgharzadehiana itself is not typically used as a probiotic or therapeutic agent, understanding its behavior and interactions with the human body can inform the development of new treatment strategies. Research into its role in biofilm-associated infections may lead to innovative approaches to disrupt these structures and enhance treatment efficacy. Overall, the clinical implications of Pseudomonas asgharzadehiana underscore the importance of ongoing surveillance and research to better understand its pathogenic potential and to develop effective interventions against infections caused by this organism.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas asgharzadehiana is a bacterium commonly associated with a variety of soil ecosystems and aquatic environments. This microorganism thrives in nutrient-rich soil where it plays a crucial role in the decomposition of organic matter, contributing to nutrient cycling and soil fertility. Its ability to degrade complex organic compounds makes it an important player in the rhizosphere, where it interacts with plant roots, promoting plant health through mechanisms such as nutrient solubilization and pathogen suppression. In aquatic habitats, Pseudomonas asgharzadehiana can be found in both freshwater and marine environments. Here, it participates in the breakdown of organic pollutants, thus playing a significant role in bioremediation processes. This bacterium is known for its metabolic versatility, allowing it to adapt to varying environmental conditions, including changes in temperature, pH, and salinity. Notably, Pseudomonas asgharzadehiana exhibits symbiotic relationships with certain plants, enhancing their growth and resistance to diseases. Its presence in the microbiome of plants can lead to improved nutrient uptake and overall plant vigor, showcasing its importance in agricultural ecosystems. Overall, Pseudomonas asgharzadehiana is a vital microorganism in both terrestrial and aquatic biomes, contributing to ecological balance and sustainability through its diverse metabolic capabilities and interactions with other organisms.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas asgharzadehiana has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where this organism is utilized for its ability to produce enzymes that can facilitate biodegradation of pollutants. This makes it a valuable asset in waste management, particularly in the treatment of contaminated soils and water, where it can help break down harmful substances into less toxic forms. In the realm of biofuel production, Pseudomonas asgharzadehiana has been studied for its capacity to metabolize various substrates, potentially leading to the generation of biofuels through fermentation processes. This capability not only contributes to renewable energy sources but also aids in the reduction of waste materials. Furthermore, the organism has implications in pharmaceutical development, where its metabolic pathways can be harnessed for the production of bioactive compounds. These compounds may serve as precursors for drug synthesis or as agents in therapeutic applications. Overall, the versatility of Pseudomonas asgharzadehiana in these industrial sectors highlights its importance in advancing sustainable practices and innovative solutions in biotechnology, waste management, and beyond.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	google/gemma-7b-it	openchat/openchat-7b	mistralai/mistral-7b-instruct	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	true	true	true	true	false	false	true	false	false	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Host association	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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