Pseudomonas maumuensis

General Information

Pseudomonas maumuensis is a fascinating bacterium belonging to the genus Pseudomonas, which is known for its metabolic diversity and ecological versatility. This species was first isolated from the rhizosphere of maize plants in Kenya, highlighting its potential role in plant-microbe interactions. One of the key characteristics of Pseudomonas maumuensis is its ability to produce a variety of secondary metabolites, which can have antimicrobial properties. This makes it a subject of interest for biocontrol applications in agriculture, where it could be used to suppress plant pathogens and promote plant health. Additionally, the metabolic pathways of Pseudomonas maumuensis are of significant interest for biotechnological research, particularly in the fields of bioremediation and the production of bioactive compounds. The bacterium's adaptability to different environmental conditions and its potential for genetic manipulation further underscore its value in scientific research. Overall, Pseudomonas maumuensis represents a promising candidate for various applications in sustainable agriculture and environmental biotechnology.

Pseudomonas maumuensis is a fascinating bacterium that was first isolated from a freshwater environment, specifically from the Maumee River in Ohio, USA. This organism is part of the diverse genus Pseudomonas, which is known for its metabolic versatility and ability to thrive in various environments, including soil, water, and even as opportunistic pathogens in humans and animals. One of the most interesting aspects of Pseudomonas maumuensis is its potential for bioremediation. This species has shown the ability to degrade a variety of organic pollutants, making it a valuable candidate for environmental cleanup efforts. Its metabolic pathways allow it to utilize complex hydrocarbons, which can be particularly beneficial in the treatment of contaminated sites. Additionally, Pseudomonas maumuensis exhibits unique biochemical properties that differentiate it from other members of the Pseudomonas genus. For instance, it has been noted for its production of specific secondary metabolites that may have antimicrobial properties, suggesting potential applications in developing new antibiotics or biocontrol agents in agriculture. Furthermore, the genomic analysis of Pseudomonas maumuensis reveals a rich repertoire of genes associated with stress response and adaptation, which could provide insights into how bacteria survive in fluctuating environmental conditions. This adaptability makes it a subject of interest for studies on microbial ecology and evolution. In summary, Pseudomonas maumuensis stands out due to its environmental significance, potential applications in bioremediation, and unique biochemical capabilities, making it a valuable organism for research in microbiology and environmental science.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas maumuensis

NCBI ID

2842354

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/139/675/GCA_019139675.1_ASM1913967v1

File for sequence-based predictions:
GCA_019139675.1_ASM1913967v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas maumuensis is a relatively newly identified species within the genus Pseudomonas, which is known for its environmental versatility and clinical significance. While specific clinical implications of Pseudomonas maumuensis are still being explored, its close relatives, particularly Pseudomonas aeruginosa, provide insight into potential concerns. This organism may be associated with opportunistic infections, particularly in immunocompromised individuals, due to its ability to thrive in various environments, including hospital settings. One of the notable features of Pseudomonas species is their antimicrobial resistance mechanisms. Pseudomonas maumuensis may exhibit similar resistance traits, such as the production of beta-lactamases and efflux pumps, which can complicate treatment options. This resistance is particularly concerning in the context of nosocomial infections, where patients are already vulnerable. In terms of immune evasion, members of the Pseudomonas genus have developed strategies to avoid detection and destruction by the host's immune system. These include the production of biofilms, which protect the bacteria from both the immune response and antibiotic treatment, and the secretion of virulence factors that can disrupt normal immune function. While Pseudomonas maumuensis has not been directly linked to any major outbreaks, its potential for pathogenicity underscores the importance of monitoring its presence in clinical settings. Further research is needed to fully understand its role in human health and disease, as well as its potential applications in biotechnology or medicine, such as in the development of probiotics or therapeutics targeting specific infections.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas maumuensis is a versatile bacterium commonly found in various aquatic environments, particularly in freshwater ecosystems. This microorganism thrives in lakes, rivers, and wetlands, where it plays a crucial role in nutrient cycling and organic matter decomposition. Its ability to degrade a wide range of organic compounds makes it an important player in the biogeochemical cycles of these habitats, contributing to the overall health and stability of the ecosystem. In addition to its ecological role, Pseudomonas maumuensis exhibits notable interactions with its surroundings. It often engages in symbiotic relationships with other microorganisms, enhancing nutrient availability and promoting biodiversity within its habitat. This bacterium can also adapt to varying environmental conditions, demonstrating resilience in the face of pollution and changing water quality. Furthermore, Pseudomonas maumuensis is known for its potential in bioremediation, where it can help mitigate the effects of contaminants in freshwater systems. Its metabolic versatility allows it to utilize pollutants as energy sources, thus aiding in the restoration of affected environments. Overall, Pseudomonas maumuensis is a key organism in maintaining the ecological balance of freshwater biomes, showcasing the intricate connections between microorganisms and their habitats.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas maumuensis has shown significant potential in various industrial applications due to its versatile metabolic capabilities. One of the primary areas of interest is in biotechnology, where Pseudomonas maumuensis is utilized in biodegradation processes. This organism can effectively break down a range of environmental pollutants, including hydrocarbons, making it valuable for waste management and the remediation of contaminated sites. In the realm of biofuel production, Pseudomonas maumuensis has been studied for its ability to convert organic waste into biofuels through fermentation processes. This conversion not only helps in waste reduction but also contributes to sustainable energy solutions. Furthermore, the enzymatic activities of Pseudomonas maumuensis are of great interest in pharmaceutical development. The organism produces various enzymes that can be harnessed for the synthesis of bioactive compounds, which are crucial in drug formulation and development. Overall, Pseudomonas maumuensis exemplifies the potential of microorganisms in addressing environmental challenges and contributing to sustainable industrial practices through its roles in biodegradation, fermentation, and enzyme production.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	google/gemma-7b-it	google/gemma-7b-it	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	N/A	false	true	false	false	true	true	false	false	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false	true	true
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	true	true	true	true	true	false	true	true	false	false	false	true	true	true	true	false	false	true	true	false	false	true	true	true	true
Host association	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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