Pseudomonas xanthosomatis

General Information

Pseudomonas xanthosomatis is a bacterium that has garnered attention due to its unique ecological niche and potential applications in agriculture. This microorganism was originally isolated from the rhizosphere of Xanthosoma sagittifolium, a tropical plant commonly known as tannia or yautia. One of the most intriguing aspects of Pseudomonas xanthosomatis is its plant growth-promoting properties. It has been observed to produce various secondary metabolites that can enhance plant health and growth, making it a candidate for use in sustainable agriculture practices. Additionally, Pseudomonas xanthosomatis exhibits a remarkable ability to produce siderophores, which are compounds that bind and sequester iron from the environment. This trait is particularly valuable in iron-limited soils, where the bacterium can help plants acquire essential nutrients. The production of these siderophores also gives Pseudomonas xanthosomatis a competitive edge over other microorganisms in the same habitat. From a research perspective, the genetic and metabolic pathways involved in these processes are of significant interest. Understanding these pathways could lead to the development of biofertilizers or biocontrol agents that reduce the need for chemical fertilizers and pesticides. Moreover, the study of Pseudomonas xanthosomatis contributes to the broader understanding of plant-microbe interactions and the role of the rhizosphere microbiome in plant health. In summary, Pseudomonas xanthosomatis is a bacterium with promising applications in agriculture due to its plant growth-promoting abilities and its potential to improve nutrient acquisition in plants. Its unique characteristics make it a valuable subject for ongoing and future research in microbial ecology and sustainable agriculture.*

Pseudomonas xanthosomatis is a fascinating bacterium known for its unique metabolic capabilities and ecological versatility. This species is part of the Pseudomonas genus, which is renowned for its adaptability to various environments, including soil, water, and even plant surfaces. One of the most interesting aspects of P. xanthosomatis is its ability to degrade a wide range of organic compounds, making it a valuable organism in bioremediation efforts. This characteristic allows it to play a crucial role in the detoxification of polluted environments, particularly those contaminated with hydrocarbons and other toxic substances. Another notable feature of P. xanthosomatis is its production of pigments, which can contribute to its ecological interactions and survival strategies. The pigments not only provide protection against UV radiation but also play a role in the bacterium's ability to compete with other microorganisms in its niche. The vibrant coloration can also be indicative of its metabolic state and environmental adaptations. From a research perspective, P. xanthosomatis serves as an excellent model organism for studying microbial metabolism and environmental microbiology. Its genetic and biochemical pathways are of significant interest, particularly in understanding how bacteria can adapt to and thrive in diverse and often challenging environments. This adaptability makes it a key player in studies related to microbial ecology and the development of sustainable biotechnological applications. Overall, Pseudomonas xanthosomatis exemplifies the remarkable diversity and utility of bacteria in both natural ecosystems and applied sciences.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas xanthosomatis

NCBI ID

2842356

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/139/835/GCA_019139835.1_ASM1913983v1

File for sequence-based predictions:
GCA_019139835.1_ASM1913983v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas xanthosomatis is a member of the Pseudomonas genus, which is known for its environmental versatility and potential pathogenicity. While specific clinical implications of Pseudomonas xanthosomatis are not as extensively documented as those of other Pseudomonas species, it is important to consider its potential role in human health and disease. Pseudomonas species are often associated with opportunistic infections, particularly in immunocompromised individuals, and can lead to serious conditions such as pneumonia, sepsis, and wound infections. One of the notable features of Pseudomonas xanthosomatis is its potential for antimicrobial resistance, which is a significant concern in clinical settings. Like other members of the Pseudomonas genus, it may possess mechanisms that confer resistance to multiple classes of antibiotics, complicating treatment options for infections. This resistance can arise from various factors, including the production of beta-lactamases, efflux pumps, and biofilm formation, which can protect the bacteria from both the host immune response and antimicrobial agents. In terms of immune evasion, Pseudomonas xanthosomatis may utilize strategies similar to those of other Pseudomonas species, such as the secretion of virulence factors that disrupt host immune signaling and promote survival in hostile environments. This ability to evade the immune response can lead to chronic infections, particularly in patients with underlying health conditions. While there is limited information on specific outbreaks or infections directly attributed to Pseudomonas xanthosomatis, its close relation to other pathogenic Pseudomonas species suggests that it could be involved in similar clinical scenarios. Further research is needed to fully elucidate its pathogenic potential and clinical relevance. Overall, understanding the characteristics of Pseudomonas xanthosomatis is crucial for anticipating its impact on human health, particularly in the context of nosocomial infections and antimicrobial stewardship.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas xanthosomatis is a versatile bacterium commonly found in a variety of habitat types, particularly in soil and water environments. This microorganism thrives in nutrient-rich conditions, often associated with decaying organic matter, which provides an abundant source of nutrients for its metabolic processes. Its presence is frequently noted in agricultural soils, where it plays a crucial role in the decomposition of organic materials, thus contributing to nutrient cycling and soil health. In aquatic environments, Pseudomonas xanthosomatis can be found in freshwater and marine ecosystems, where it participates in the breakdown of pollutants and organic waste. This ability to degrade complex compounds makes it an important player in bioremediation, helping to restore contaminated habitats. Notably, this bacterium exhibits a range of interactions with its surroundings, including symbiotic relationships with plants. It can enhance plant growth by promoting nutrient availability and protecting against certain pathogens, showcasing its role as a beneficial microorganism in agricultural ecosystems. Furthermore, Pseudomonas xanthosomatis demonstrates remarkable environmental adaptability, allowing it to survive in varying conditions, from aerobic to anaerobic environments. This adaptability not only aids in its survival but also enhances its ecological significance across diverse biomes.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas xanthosomatis has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to degrade complex organic compounds, making it valuable in waste management processes. This organism can effectively break down pollutants in contaminated environments, contributing to bioremediation efforts aimed at restoring ecological balance. In the realm of biofuel production, Pseudomonas xanthosomatis has been studied for its capacity to ferment biomass into biofuels. The organism's metabolic pathways allow it to convert sugars derived from plant materials into ethanol and other biofuels through fermentation, thus providing a sustainable alternative to fossil fuels. Furthermore, this microorganism is also of interest in pharmaceutical development. Its unique enzymatic activities can be harnessed for the production of valuable pharmaceuticals, including antibiotics and other bioactive compounds. The ability of Pseudomonas xanthosomatis to produce specific enzymes makes it a candidate for enzyme production, which can be utilized in various biochemical applications. Overall, the versatility of Pseudomonas xanthosomatis in these industrial sectors highlights its importance as a tool for innovation and sustainability in modern biotechnology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	google/gemini-pro-1.5	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	google/gemini-flash-1.5	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	openchat/openchat-7b	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	false ✗	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false
Host association	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	true ✗	true ✗	false ✓	false ✓	true ✗	false ✓	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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