Pseudomonas muyukensis

General Information

Pseudomonas muyukensis is a fascinating microorganism within the genus Pseudomonas, known for its diverse metabolic capabilities and environmental adaptability. One of the most intriguing aspects of Pseudomonas muyukensis is its ability to thrive in various ecological niches, ranging from soil and water to plant surfaces. This adaptability makes it a valuable subject for studying microbial ecology and environmental microbiology. From a biotechnological perspective, Pseudomonas muyukensis holds significant potential due to its metabolic versatility. It can degrade a wide array of organic compounds, including pollutants, which positions it as a candidate for bioremediation applications. The organism's enzymatic machinery is of particular interest, as it can be harnessed for the breakdown of environmental contaminants, contributing to cleaner ecosystems. Another noteworthy feature of Pseudomonas muyukensis is its ability to produce secondary metabolites with antimicrobial properties. These compounds can inhibit the growth of other microorganisms, making Pseudomonas muyukensis a potential source of new antibiotics or biocontrol agents. This characteristic is especially valuable in the context of rising antibiotic resistance, as it opens avenues for the discovery of novel antimicrobial agents. Genomic studies of Pseudomonas muyukensis have revealed a complex regulatory network that allows it to respond to environmental changes efficiently. This regulatory flexibility is a key factor in its survival and adaptability, providing insights into microbial resilience and stress responses. In summary, Pseudomonas muyukensis is a microorganism of considerable interest due to its environmental adaptability, metabolic diversity, and potential applications in bioremediation and antimicrobial discovery. Its study not only enhances our understanding of microbial ecology but also offers practical benefits for environmental and medical sciences.

Pseudomonas muyukensis is a fascinating bacterium that has garnered attention due to its unique metabolic capabilities and ecological significance. This species is part of the diverse genus Pseudomonas, known for its versatility in various environments, including soil, water, and even as plant symbionts. One of the most interesting aspects of P. muyukensis is its ability to degrade a wide range of organic compounds, making it a potential candidate for bioremediation applications. This characteristic is particularly valuable in the context of environmental cleanup, as it can help in the breakdown of pollutants such as hydrocarbons and other toxic substances. Another notable feature of P. muyukensis is its production of secondary metabolites, which can have antimicrobial properties. This opens up avenues for research into natural product chemistry and the development of new antibiotics. The potential for discovering novel compounds that can combat antibiotic-resistant bacteria is a significant area of interest in current microbiological research. Furthermore, P. muyukensis has been studied for its interactions with plant roots, suggesting a role in promoting plant growth and health. This symbiotic relationship highlights the importance of this bacterium in agricultural contexts, where it could be utilized as a biofertilizer or biocontrol agent. Such applications could lead to more sustainable agricultural practices, reducing the reliance on chemical fertilizers and pesticides. Overall, Pseudomonas muyukensis stands out not only for its ecological roles but also for its potential applications in biotechnology and environmental science, making it a valuable organism for ongoing research and exploration.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas muyukensis

NCBI ID

2842357

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/139/535/GCA_019139535.1_ASM1913953v1

File for sequence-based predictions:
GCA_019139535.1_ASM1913953v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Pseudomonas muyukensis is a member of the Pseudomonas genus, which is known for its environmental versatility and clinical significance. While specific studies on Pseudomonas muyukensis are limited, its close relatives, particularly Pseudomonas aeruginosa, provide insight into potential clinical implications. This organism may be associated with opportunistic infections, particularly in immunocompromised individuals, due to its ability to thrive in various environments, including soil and water. It can potentially cause infections in patients with underlying health conditions, such as cystic fibrosis or those with indwelling medical devices. One of the notable features of Pseudomonas species is their antimicrobial resistance mechanisms. They often exhibit resistance to multiple classes of antibiotics, which complicates treatment options. This resistance is attributed to various factors, including the production of beta-lactamases, efflux pumps, and biofilm formation, which can protect the bacteria from both the host immune response and antimicrobial agents. In terms of immune evasion, Pseudomonas species can manipulate host immune responses, allowing them to persist in the host and evade clearance. This includes the production of virulence factors that inhibit phagocytosis and modulate inflammatory responses. While Pseudomonas muyukensis itself may not have been directly linked to any major outbreaks, its relatives are known to be involved in healthcare-associated infections, particularly in settings such as intensive care units. Understanding the characteristics of Pseudomonas muyukensis could be crucial for monitoring and managing potential infections, especially in vulnerable populations. Further research is needed to fully elucidate the clinical relevance of Pseudomonas muyukensis and its potential role in human health and disease.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas muyukensis is a versatile bacterium commonly found in a variety of habitat types, particularly in soil and aquatic environments. This microorganism thrives in nutrient-rich conditions, often associated with decaying organic matter, which provides a suitable environment for its metabolic activities. Its presence is frequently noted in freshwater ecosystems, where it plays a crucial role in the degradation of organic pollutants, thus contributing to the overall health of the aquatic biome. In soil ecosystems, Pseudomonas muyukensis is known for its ability to promote plant growth through nutrient cycling and bioremediation. It can enhance the availability of essential nutrients such as nitrogen and phosphorus, making it an important player in soil fertility. Additionally, this bacterium exhibits symbiotic relationships with various plant species, aiding in their nutrient uptake and providing protection against certain pathogens. Furthermore, Pseudomonas muyukensis demonstrates remarkable environmental adaptability, allowing it to survive in a range of conditions, including varying pH levels and temperatures. Its metabolic versatility enables it to utilize a wide array of organic compounds, making it a key organism in biodegradation processes and ecosystem resilience. Overall, Pseudomonas muyukensis is integral to maintaining the balance of its ecosystems, contributing to nutrient cycling, pollutant degradation, and plant health, thereby underscoring its ecological significance.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas muyukensis has shown significant potential in various industrial applications due to its versatile metabolic capabilities. One of the primary areas of interest is in biotechnology, where Pseudomonas muyukensis is utilized in biodegradation processes. This organism can effectively break down a range of environmental pollutants, including hydrocarbons, making it valuable for waste management and the remediation of contaminated sites. Its ability to degrade toxic compounds can be harnessed in bioremediation strategies to clean up oil spills and other hazardous waste scenarios. In the realm of biofuel production, Pseudomonas muyukensis has been studied for its potential to convert organic materials into biofuels through fermentation processes. This capability allows for the transformation of waste biomass into renewable energy sources, contributing to sustainable energy solutions. Furthermore, the enzymatic activities of Pseudomonas muyukensis are of great interest in pharmaceutical development. The organism can produce various enzymes that may be utilized in the synthesis of pharmaceutical compounds or in the development of biocatalysts for drug production. This aspect highlights its role in the biotechnology sector, where enzyme production is crucial for efficient and environmentally friendly manufacturing processes. Overall, Pseudomonas muyukensis exemplifies the potential of microorganisms in addressing environmental challenges and contributing to sustainable industrial practices through its involvement in biodegradation, fermentation, and enzyme production.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	anthropic/claude-3-haiku:beta	meta-llama/llama-3-70b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	openchat/openchat-7b	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	google/gemma-7b-it	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct	google/gemini-pro	google/gemini-pro
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	aerobic ✓	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	false	true	true	true	true	true	true	false	false	false	true	true	true	true	false	false	true	true	true	true	true	true	true	true	false	false	true	true
Host association	FALSE	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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