Pseudomonas canavaninivorans

General Information

Pseudomonas canavaninivorans is a fascinating microorganism primarily due to its unique metabolic capabilities. This bacterium is notable for its ability to degrade canavanine, a non-proteinogenic amino acid that is toxic to many organisms. The ability to metabolize canavanine makes Pseudomonas canavaninivorans particularly interesting for studies in bioremediation and biodegradation. The species was first isolated from soil, indicating its role in the natural breakdown of organic compounds in the environment. This characteristic is valuable for environmental microbiologists looking to harness natural processes for cleaning up contaminated sites. Moreover, Pseudomonas canavaninivorans belongs to the genus Pseudomonas, which is well-known for its metabolic diversity and adaptability to various ecological niches. This adaptability is often linked to the presence of a large genome with numerous genes dedicated to the degradation of complex organic molecules. In addition to its environmental applications, the study of Pseudomonas canavaninivorans can provide insights into the mechanisms of amino acid metabolism and resistance to toxic compounds. This could have broader implications for understanding microbial survival strategies and developing new biotechnological applications. Overall, the unique ability of Pseudomonas canavaninivorans to utilize canavanine as a carbon and nitrogen source underscores its potential in both scientific research and practical applications in environmental management.

Pseudomonas canavaninivorans is a fascinating bacterium known for its unique ability to utilize canavanine, a non-protein amino acid found in certain plants, as a sole nitrogen source. This metabolic capability not only highlights the organism's adaptability but also its potential role in bioremediation and agricultural applications. Canavanine is structurally similar to arginine, and the ability of P. canavaninivorans to metabolize it suggests a sophisticated enzymatic machinery that can be of interest for biotechnological exploitation. The organism has been isolated from various environments, including soil and plant rhizospheres, indicating its ecological versatility. Its presence in these habitats suggests that it may play a role in nutrient cycling and plant-microbe interactions, which are critical for ecosystem health. Research into P. canavaninivorans could provide insights into how microorganisms adapt to utilize unconventional nitrogen sources, which is particularly relevant in the context of sustainable agriculture and soil health. Furthermore, the study of this bacterium may contribute to our understanding of microbial resistance to plant-derived compounds, which can inform the development of pest-resistant crops. Overall, Pseudomonas canavaninivorans stands out as a valuable organism for research in microbial ecology, biochemistry, and agricultural science.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Pseudomonadales

Family: Pseudomonadaceae

Genus: Pseudomonas

Species: Pseudomonas canavaninivorans

NCBI ID

2859001

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/024/749/365/GCF_024749365.1_ASM2474936v1

File for sequence-based predictions:
GCF_024749365.1_ASM2474936v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas canavaninivorans is a member of the Pseudomonas genus, which is known for its environmental versatility and potential pathogenicity. While specific clinical implications of Pseudomonas canavaninivorans are not as extensively documented as those of other Pseudomonas species, it is important to consider its general characteristics and potential roles in human health and disease. Pathogenicity: Members of the Pseudomonas genus, including Pseudomonas canavaninivorans, are often associated with opportunistic infections, particularly in immunocompromised individuals. They can cause a range of infections, including respiratory tract infections, urinary tract infections, and skin infections. The ability of this organism to thrive in various environments suggests it may have similar pathogenic potential. Antimicrobial Resistance: Pseudomonas species are notorious for their antimicrobial resistance mechanisms, which can complicate treatment options. While specific resistance profiles for Pseudomonas canavaninivorans are not well-characterized, the genus is known for acquiring resistance genes and exhibiting intrinsic resistance to many antibiotics, making infections difficult to treat. Immune Evasion Strategies: Like other Pseudomonas species, Pseudomonas canavaninivorans may employ various strategies to evade the immune response, including biofilm formation and the production of virulence factors that inhibit phagocytosis. These mechanisms can contribute to chronic infections and persistence in host tissues. Medical Applications: Although Pseudomonas canavaninivorans itself may not have direct medical applications, the broader Pseudomonas genus has been studied for potential use in bioremediation and as a model organism in microbiological research. Understanding the metabolic pathways and interactions of this organism could provide insights into its ecological roles and potential applications in biotechnology. In summary, while Pseudomonas canavaninivorans may not be a well-documented pathogen, its affiliation with the Pseudomonas genus suggests it could have significant implications for human health, particularly in the context of infections and antimicrobial resistance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Pseudomonas canavaninivorans is a bacterium primarily associated with soil ecosystems and aquatic environments. This microorganism thrives in nutrient-rich conditions, often found in areas where organic matter is abundant, such as decaying plant material and agricultural soils. Its ability to degrade various compounds makes it a vital player in the nutrient cycling processes within these biomes. In soil ecosystems, Pseudomonas canavaninivorans contributes to the breakdown of organic matter, facilitating the release of nutrients back into the soil. This process not only enhances soil fertility but also supports plant growth, making the bacterium an essential component of the terrestrial food web. Its interactions with plant roots can lead to beneficial effects, such as promoting plant health through the suppression of pathogens and enhancing nutrient uptake. In aquatic environments, this bacterium is often found in freshwater systems, where it plays a role in the degradation of organic pollutants. Its metabolic versatility allows it to utilize a range of substrates, contributing to the bioremediation of contaminated water bodies. This capability highlights its importance in maintaining the health of aquatic ecosystems by breaking down harmful substances and supporting the overall balance of microbial communities. Overall, Pseudomonas canavaninivorans exemplifies the intricate relationships within its biomes, showcasing its role in ecosystem functioning, symbiotic interactions, and environmental adaptation.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Pseudomonas canavaninivorans has shown significant potential in various industrial applications. One of the most notable areas is in biotechnology, where it is utilized for its ability to degrade specific compounds, making it valuable in biodegradation processes. This organism can break down canavanine, a toxic amino acid found in certain plants, which highlights its role in bioremediation efforts aimed at detoxifying contaminated environments. In the realm of waste management, Pseudomonas canavaninivorans contributes to the treatment of organic waste by facilitating the breakdown of complex organic materials. Its enzymatic activity allows for the efficient conversion of waste into less harmful substances, thus playing a crucial role in waste treatment systems. Furthermore, this microorganism has potential applications in biofuel production. By participating in fermentation processes, it can help convert biomass into biofuels, providing a sustainable alternative to fossil fuels. The metabolic pathways utilized by Pseudomonas canavaninivorans can be harnessed to enhance the yield of biofuels from agricultural residues and other organic materials. In pharmaceutical development, the unique metabolic capabilities of Pseudomonas canavaninivorans may be explored for the production of novel compounds or as a model organism for studying drug interactions and resistance mechanisms. Its ability to metabolize various substrates can lead to the discovery of new bioactive molecules that could be beneficial in drug formulation. Overall, Pseudomonas canavaninivorans exemplifies the versatility of microorganisms in industrial applications, particularly in biodegradation, waste management, biofuel production, and pharmaceutical development, making it a valuable organism in the field of environmental and industrial biotechnology.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	google/gemma-7b-it	google/gemma-7b-it	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	false	true	true	false	true	false	false	false	false	true	true	false	false	false	false	true	true	false	false	true	true	true	true	true	true	false	false
Host association	TRUE	false ✗	false ✗	true ✓	true ✓	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗
Plant pathogenicity	TRUE	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	gamma	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	spirillum ✗	spirillum ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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