Oricola indica

General Information

Oricola indica is a fascinating microorganism that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This bacterium was first isolated from the gut of the Indian flying fox (Pteropus giganteus), which highlights its adaptation to a specialized environment. One of the most intriguing aspects of O. indica is its ability to thrive in the gut microbiome of a large fruit bat, suggesting it plays a role in the digestion and metabolism of complex carbohydrates found in the bat's diet. From a research perspective, O. indica is valuable due to its potential in bioconversion processes. The enzymes produced by this bacterium may be harnessed for the breakdown of plant materials, which is of significant interest for the development of sustainable biofuels and bioproducts. Additionally, the study of O. indica can provide insights into the co-evolution of gut microbiota and their host organisms, offering broader implications for understanding symbiotic relationships in other species. Another noteworthy characteristic of O. indica is its genetic makeup, which may contain novel genes responsible for its unique metabolic capabilities. The exploration of its genome could lead to the discovery of new enzymes and metabolic pathways that are not only interesting from a basic science perspective but also have practical applications in industrial microbiology and biotechnology. In summary, Oricola indica stands out due to its specialized habitat, potential biotechnological applications, and the promise of novel genetic insights. Its study not only enhances our understanding of microbial diversity and symbiosis but also opens up new avenues for biotechnological innovation.

Oricola indica is a fascinating microorganism that has garnered attention for its unique ecological role and potential applications in biotechnology. This bacterium is primarily found in soil and aquatic environments, where it plays a significant part in nutrient cycling, particularly in the degradation of organic matter. Its ability to metabolize a variety of organic compounds makes it a valuable organism for bioremediation efforts, especially in contaminated environments where pollutants need to be broken down efficiently. One of the most interesting aspects of Oricola indica is its capacity for biodegradation. This organism has been shown to effectively degrade complex organic pollutants, which positions it as a potential candidate for use in environmental cleanup strategies. Researchers are particularly interested in its metabolic pathways, which could provide insights into how microorganisms adapt to and thrive in polluted environments. Additionally, Oricola indica has been studied for its symbiotic relationships with plants. It has been observed to enhance plant growth by improving nutrient availability in the soil, which highlights its importance in agricultural practices. This characteristic not only underscores its ecological significance but also suggests potential applications in sustainable agriculture, where it could be used to promote healthier crop yields without the need for chemical fertilizers. Furthermore, the genetic and biochemical properties of Oricola indica are of great interest to microbiologists. Its genome contains unique genes that may be involved in the degradation of specific pollutants, making it a subject of study for those looking to harness microbial capabilities for environmental and industrial applications. The exploration of these genetic traits could lead to advancements in synthetic biology and the development of engineered strains with enhanced degradation capabilities. In summary, Oricola indica stands out due to its biodegradation abilities, plant growth promotion, and genetic uniqueness, making it a valuable organism for both ecological research and practical applications in environmental management and agriculture.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Alphaproteobacteria

Order: Hyphomicrobiales

Family: Ahrensiaceae

Genus: Oricola

Species: Oricola indica

NCBI ID

2872591

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/019/966/595/GCA_019966595.1_ASM1996659v1

File for sequence-based predictions:
GCA_019966595.1_ASM1996659v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Oricola indica is a recently identified bacterium that has garnered attention for its potential clinical implications. It is primarily associated with infections in immunocompromised patients, particularly those with underlying health conditions such as diabetes or cancer. The organism has been isolated from various clinical specimens, indicating its possible role as an opportunistic pathogen. Clinical relevance is underscored by its association with nosocomial infections, where it may contribute to complications in hospitalized patients. One of the notable aspects of Oricola indica is its potential for antimicrobial resistance, which poses a challenge for treatment options. Preliminary studies suggest that it may exhibit resistance to multiple classes of antibiotics, complicating management strategies for infections caused by this organism. Understanding its resistance mechanisms is crucial for developing effective therapeutic approaches. In terms of immune evasion, Oricola indica may possess strategies that allow it to survive within the host, potentially leading to chronic infections. This aspect is particularly concerning in patients with weakened immune systems, where the organism can persist and cause prolonged illness. While research is still ongoing, the identification of Oricola indica highlights the need for increased surveillance and further studies to elucidate its pathogenic potential and clinical significance. As our understanding of this organism evolves, it may lead to the development of targeted therapeutics or interventions to mitigate its impact on human health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Oricola indica is primarily associated with tropical and subtropical environments, particularly in regions characterized by high humidity and warm temperatures. This microorganism thrives in deciduous forests and grasslands, where it plays a significant role in nutrient cycling and soil health. Its presence is often linked to the decomposition of organic matter, contributing to the soil microbiome and enhancing soil fertility through the breakdown of complex organic compounds. Interactions with its surroundings are notable, as _Oricola indica engages in symbiotic relationships with various plant species. This interaction aids in the uptake of nutrients, particularly nitrogen, which is essential for plant growth. The microorganism's ability to fix atmospheric nitrogen makes it a valuable component of the soil ecosystem, promoting plant health and biodiversity. In addition to its role in nutrient cycling, _Oricola indica is also adapted to withstand fluctuations in moisture levels, allowing it to thrive in seasonally dry environments. This adaptability is crucial for its survival in savannas and woodlands, where it can endure periods of drought while maintaining its ecological functions. Overall, _Oricola indica is a vital organism within its biomes, contributing to the health of ecosystems through its interactions with plants and its role in the decomposition process.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Oricola indica has shown significant potential in various industrial applications. One of the primary areas of interest is in biotechnology, where Oricola indica is utilized for its unique metabolic capabilities. This organism is known to participate in fermentation processes, which can be harnessed for the production of bioactive compounds, including organic acids and alcohols, making it valuable in the food and beverage industry. In the realm of waste management, Oricola indica has demonstrated effective biodegradation abilities, particularly in the breakdown of complex organic materials. This characteristic is crucial for the treatment of wastewater and the remediation of contaminated environments, as it aids in the reduction of pollutants and the recycling of nutrients back into the ecosystem. Furthermore, Oricola indica has potential applications in biofuel production. Its metabolic pathways can be exploited to convert biomass into biofuels through fermentation processes, contributing to sustainable energy solutions. The efficiency of Oricola indica in converting substrates into fermentable sugars makes it a candidate for enhancing bioethanol production. In the pharmaceutical development sector, Oricola indica is being studied for its ability to produce various enzymes and metabolites that may have therapeutic properties. The enzymatic activity of this microorganism can lead to the discovery of new drugs or the improvement of existing pharmaceutical compounds. Overall, Oricola indica represents a versatile microorganism with promising applications across multiple industries, particularly in biotechnology, waste management, biofuel production, and pharmaceutical development, showcasing its importance in advancing sustainable practices and innovative solutions.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	anthropic/claude-3.5-sonnet	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	google/gemini-flash-1.5	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	openchat/openchat-7b	mistralai/mistral-7b-instruct	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	google/gemini-pro-1.5	openai/gpt-4	openai/gpt-4	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	google/gemini-pro	google/gemini-pro	openai/gpt-4o	openai/gpt-4o	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct
Motility	TRUE	true ✓	true ✓	false ✗	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain positive ✗	gram stain negative ✓	gram stain positive ✗	gram stain variable ✗	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain positive ✗	N/A	gram stain negative ✓	N/A	gram stain variable ✗
Aerophilicity	aerobic	aerobic ✓	aerotolerant ✗	anaerobic ✗	N/A	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A
Extreme environment tolerance	FALSE	false ✓	true ✗	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biofilm formation	N/A	true	true	false	true	true	true	true	true	true	true	false	true	true	true	true	false	false	true	true	false	false	true	true	false	false
Animal pathogenicity	N/A	false	false	false	false	true	false	true	false	false	false	false	false	false	false	false	false	false	true	true	false	false	false	false	false	false
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	false	true	true	true	true	true	true	true	true	false	false	true	true	false	false	true	true	true	true	false	false	false	false
Host association	N/A	false	true	false	false	true	false	true	true	false	true	false	false	false	false	false	false	false	true	true	false	false	false	false	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	gamma	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗

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