Rhodococcus yananensis

General Information

Rhodococcus yananensis is a fascinating microorganism belonging to the genus Rhodococcus, which is renowned for its metabolic versatility and biotechnological potential. One of the most intriguing aspects of R. yananensis is its ability to degrade a wide range of organic compounds, including pollutants and toxic substances. This makes it a valuable candidate for bioremediation efforts, particularly in environments contaminated with hydrocarbons and other industrial pollutants. Additionally, R. yananensis has been studied for its potential in the production of bioactive compounds. The genus Rhodococcus is known for its capacity to produce a variety of secondary metabolites, including antibiotics, enzymes, and biosurfactants. These compounds have significant applications in pharmaceuticals, agriculture, and industry. The adaptability of R. yananensis to different environmental conditions further underscores its importance. It can thrive in diverse habitats, from soil to aquatic environments, demonstrating resilience and flexibility. This adaptability is partly due to its robust genetic makeup, which includes genes responsible for the degradation of complex organic molecules and resistance to harsh conditions. In summary, Rhodococcus yananensis stands out due to its remarkable biodegradation capabilities, potential for biotechnological applications, and environmental adaptability. These characteristics make it a subject of ongoing research with promising implications for environmental science and industrial biotechnology.

Rhodococcus yananensis is a fascinating bacterium belonging to the genus Rhodococcus, which is known for its remarkable metabolic versatility. This organism is particularly interesting due to its ability to degrade a wide range of organic compounds, including complex hydrocarbons and various pollutants. This characteristic makes it a valuable candidate for bioremediation applications, where it can be employed to clean up contaminated environments, such as oil spills or sites polluted with industrial waste. One of the unique features of R. yananensis is its capacity to utilize unusual carbon sources, which allows it to thrive in diverse ecological niches. This adaptability is attributed to its extensive enzymatic repertoire, enabling it to break down complex molecules that many other microorganisms cannot. The study of R. yananensis can provide insights into the mechanisms of biodegradation and the potential for harnessing these processes in environmental biotechnology. Additionally, R. yananensis has been noted for its potential in the production of valuable bioproducts, including enzymes and bioactive compounds. Research into its metabolic pathways could lead to the development of novel biocatalysts for industrial processes, further enhancing its significance in both environmental and industrial microbiology. Overall, the unique metabolic capabilities and biotechnological potential of Rhodococcus yananensis make it a subject of considerable interest in microbial research, particularly in the fields of environmental science and industrial applications.

Taxonomy

Superkingdom: Bacteria

Phylum: Actinomycetota

Class: Actinomycetes

Order: Mycobacteriales

Family: Nocardiaceae

Genus: Rhodococcus

Species: Rhodococcus yananensis

NCBI ID

2879464

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/020/515/525/GCA_020515525.1_ASM2051552v1

File for sequence-based predictions:
GCA_020515525.1_ASM2051552v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The microorganism Rhodococcus yananensis is a member of the genus Rhodococcus, which is known for its environmental versatility and potential pathogenicity. While R. yananensis is not as widely studied as some other species in the genus, it has been associated with opportunistic infections in immunocompromised patients. These infections can manifest in various forms, including pneumonia, skin infections, and soft tissue infections. The organism's ability to survive in harsh environments suggests it may possess unique virulence factors that contribute to its pathogenicity. One of the notable aspects of R. yananensis is its potential for antimicrobial resistance. Like other members of the Rhodococcus genus, it may exhibit resistance to multiple classes of antibiotics, complicating treatment options for infected individuals. This resistance is particularly concerning in clinical settings where patients are already vulnerable due to underlying health conditions. In terms of immune evasion, R. yananensis may utilize various strategies to avoid detection and destruction by the host's immune system, although specific mechanisms are still under investigation. Its environmental resilience and ability to metabolize a wide range of compounds also raise questions about its role in human health and disease. Currently, there are no established medical applications such as probiotics, vaccines, or therapeutics directly linked to R. yananensis. However, ongoing research into the genus Rhodococcus may reveal potential benefits or applications in biotechnology and medicine. Overall, while R. yananensis is not a common pathogen, its clinical implications warrant further study, especially in the context of emerging infections and antimicrobial resistance.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Rhodococcus yananensis is a versatile bacterium commonly found in a variety of terrestrial environments and soil ecosystems. This microorganism thrives particularly well in nutrient-rich soils, where it plays a crucial role in the degradation of organic compounds, including pollutants. Its ability to metabolize a wide range of hydrocarbons makes it an important player in bioremediation processes, helping to restore contaminated environments by breaking down toxic substances into less harmful forms. In addition to its role in pollutant degradation, Rhodococcus yananensis is also associated with plant rhizospheres, where it can establish beneficial relationships with plant roots. This symbiotic interaction enhances nutrient availability for plants, promoting growth and health. The bacterium's presence in the rhizosphere can lead to improved soil structure and fertility, contributing to the overall health of the ecosystem. Furthermore, Rhodococcus yananensis exhibits remarkable environmental adaptability, allowing it to survive in various conditions, including those with high salinity or extreme pH levels. This adaptability not only aids in its survival but also enhances its potential for use in biotechnological applications, such as the development of biofertilizers and biocontrol agents. Overall, Rhodococcus yananensis is a significant microorganism within its biomes, contributing to nutrient cycling, pollutant degradation, and plant health, making it an essential component of both natural and managed ecosystems.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Rhodococcus yananensis has shown significant potential in various industrial applications due to its versatile metabolic capabilities. One of the most notable areas is in biotechnology, where Rhodococcus yananensis is utilized for its ability to degrade a wide range of organic pollutants, making it valuable in biodegradation processes. This characteristic is particularly beneficial in waste management, where the organism can be employed to treat contaminated soils and wastewater, effectively breaking down harmful compounds such as hydrocarbons and pesticides. In the realm of biofuel production, Rhodococcus yananensis has been studied for its capacity to convert lignocellulosic biomass into fermentable sugars, which can subsequently be transformed into bioethanol. This process involves fermentation, where the organism's enzymatic activity plays a crucial role in breaking down complex carbohydrates into simpler sugars that can be fermented by other microorganisms. Furthermore, Rhodococcus yananensis is recognized for its pharmaceutical development potential, particularly in the production of valuable secondary metabolites. The organism is known to produce various enzymes that can be harnessed for the synthesis of pharmaceutical compounds, enhancing the efficiency of drug production processes. Overall, the diverse applications of Rhodococcus yananensis in biotechnology, waste management, biofuel production, and pharmaceutical development highlight its importance as a versatile microorganism in industrial settings.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 10

LLM predicted phenotypes: 3

Phenotype	High-quality annotation	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	meta-llama/llama-3-70b-instruct:nitro	anthropic/claude-3-haiku:beta	perplexity/llama-3-sonar-small-32k-chat	google/gemma-7b-it	openchat/openchat-7b	google/gemini-pro	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	openai/gpt-4o	openai/gpt-4o	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	google/gemini-flash-1.5	google/gemini-flash-1.5	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mixtral-8x7b-instruct:nitro	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	FALSE	false ✓	true ✗	true ✗	false ✓	true ✗	true ✗	false ✓	true ✗	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Gram staining	gram stain positive	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain positive ✓	N/A	gram stain variable ✗	N/A	gram stain positive ✓	N/A	gram stain positive ✓
Aerophilicity	aerobic	aerotolerant ✗	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	aerobic ✓	N/A	N/A	aerobic ✓	aerobic ✓	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	TRUE	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Biosafety level	biosafety level 1	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓	biosafety level 1 ✓
Health association	N/A	true	true	true	true	true	true	true	true	false	false	false	false	true	true	false	false	false	false	true	true	true	true	false	false	true	true	false	false
Host association	FALSE	true ✗	false ✓	true ✗	false ✓	true ✗	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	true ✗	true ✗	true ✗	true ✗	true ✗	true ✗
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	true ✗	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓
Hemolysis	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	gamma	gamma	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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