Yersinia artesiana

General Information

Yersinia artesiana is a bacterium that belongs to the genus Yersinia, which is known for containing several pathogenic species. What makes Y. artesiana particularly interesting is its environmental origin. This species was first isolated from water samples in artesian wells, which are known for their deep, pressurized groundwater. The ability of Y. artesiana to thrive in such unique and isolated environments suggests that it has specialized adaptations for survival in low-nutrient and high-pressure conditions. One of the most intriguing aspects of Y. artesiana is its potential for biotechnological applications. The unique enzymes and metabolic pathways it employs to survive in its native habitat could be harnessed for industrial processes, such as bioremediation or the synthesis of novel compounds. Additionally, studying Y. artesiana can provide insights into the evolutionary mechanisms that allow bacteria to adapt to extreme environments, which is valuable for understanding microbial life on Earth and potentially other planets. Furthermore, the genetic makeup of Y. artesiana offers a rich resource for comparative genomics. By comparing its genome with those of other Yersinia species, researchers can identify genes that are responsible for its unique traits and adaptations. This can lead to a better understanding of the genetic diversity within the Yersinia genus and the evolutionary pressures that shape it. In summary, Yersinia artesiana is a fascinating microorganism due to its unique environmental niche, potential biotechnological applications, and the insights it provides into microbial adaptation and evolution.

Yersinia artesiana is a fascinating bacterium that has garnered attention due to its unique ecological niche and potential applications in biotechnology. This species is part of the Yersinia genus, which is known for its pathogenic members, yet Y. artesiana stands out as a non-pathogenic organism. Its ability to thrive in diverse environments, including soil and aquatic systems, highlights its ecological versatility. One of the most interesting aspects of Y. artesiana is its role in the nitrogen cycle. This bacterium has been shown to possess nitrogen-fixing capabilities, which can contribute to soil fertility and plant growth. This characteristic makes it a valuable organism for agricultural research, particularly in the context of sustainable farming practices. Additionally, Y. artesiana has been studied for its potential in bioremediation. Its ability to degrade various organic pollutants positions it as a candidate for environmental cleanup efforts. Researchers are exploring its metabolic pathways to understand how it can be harnessed to break down harmful substances in contaminated environments. Furthermore, the genomic analysis of Y. artesiana has revealed unique genetic traits that may provide insights into the evolutionary adaptations of bacteria in response to environmental pressures. This makes it a subject of interest for evolutionary biologists and microbiologists alike. Overall, Yersinia artesiana represents a unique intersection of ecological importance and biotechnological potential, making it a valuable organism for ongoing research.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Enterobacterales

Family: Yersiniaceae

Genus: Yersinia

Species: Yersinia artesiana

NCBI ID

2890315

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCA/902/726/525/GCA_902726525.1_IP41384v1

File for sequence-based predictions:
GCA_902726525.1_IP41384v1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The organism Yersinia artesiana is a lesser-known member of the genus Yersinia, which includes more prominent pathogens such as Yersinia pestis, the causative agent of plague. While Y. artesiana has not been extensively studied, it is recognized for its potential clinical implications, particularly in relation to infections and its role in human health. Clinical relevance may arise from its ability to cause gastrointestinal infections, which can lead to symptoms such as diarrhea, abdominal pain, and fever. The organism is typically associated with contaminated food or water sources, highlighting the importance of food safety and hygiene in preventing outbreaks. In terms of pathogenicity, Y. artesiana may possess virulence factors similar to other Yersinia species, allowing it to evade the immune response of the host. This could involve mechanisms such as the secretion of virulence proteins that disrupt normal immune signaling pathways, thereby enhancing its survival and replication within the host. Furthermore, there is a growing concern regarding antimicrobial resistance among various Yersinia species. While specific resistance patterns for Y. artesiana are not well-documented, the potential for resistance to common antibiotics poses a significant challenge in clinical settings, necessitating ongoing surveillance and research. Overall, while Y. artesiana is not as widely recognized as other pathogens, its potential to cause infections and its implications for public health underscore the need for further investigation into its clinical significance and the development of effective prevention and treatment strategies.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Yersinia artesiana is a bacterium that is primarily associated with freshwater ecosystems and soil environments. This microorganism thrives in areas where there is a significant presence of organic matter, often found in sediments of rivers, lakes, and wetlands. Its ecological niche is characterized by a preference for nutrient-rich environments, which support its growth and metabolic activities. In these freshwater habitats, Yersinia artesiana plays a crucial role in the decomposition of organic materials, contributing to nutrient cycling and the overall health of the ecosystem. It interacts with various other microorganisms, forming complex microbial communities that enhance the breakdown of organic compounds. This interaction is vital for maintaining the balance of nutrients in the water, which supports aquatic life. Additionally, Yersinia artesiana has been documented in agricultural soils, where it can influence soil health and fertility. Its presence in these environments is often linked to the breakdown of plant residues and the enhancement of soil structure. The bacterium may also engage in symbiotic relationships with certain plants, aiding in nutrient uptake and promoting plant growth. Overall, Yersinia artesiana is an important microorganism within its biomes, contributing to ecosystem functioning, nutrient cycling, and the maintenance of biodiversity in both freshwater and terrestrial environments.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Yersinia artesiana has shown potential in various industrial applications, particularly in the fields of biotechnology and waste management. This organism is known for its ability to thrive in diverse environments, which can be harnessed for biodegradation processes. For instance, Yersinia artesiana can be utilized to break down complex organic pollutants in contaminated soils and water, making it a valuable asset in bioremediation efforts aimed at restoring polluted ecosystems. In the realm of biofuel production, Yersinia artesiana may contribute to the conversion of biomass into biofuels through fermentation processes. Its metabolic pathways can be explored to enhance the efficiency of converting agricultural waste into ethanol or other biofuels, thus promoting sustainable energy solutions. Additionally, there is potential for Yersinia artesiana in pharmaceutical development. The organism's unique biochemical properties may lead to the discovery of novel compounds with antimicrobial or therapeutic effects, which could be further developed into new drugs. The study of its enzyme production capabilities could also yield enzymes that are useful in various industrial processes, including food processing and textile manufacturing. Overall, Yersinia artesiana presents a promising avenue for innovation across multiple industries, particularly in enhancing environmental sustainability and developing new biotechnological solutions.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 8

LLM predicted phenotypes: 5

Phenotype	High-quality annotation	google/gemini-flash-1.5	openai/gpt-3.5-turbo-0125	openai/gpt-3.5-turbo-0125	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	openai/gpt-4	openai/gpt-4	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	google/gemini-pro	meta-llama/llama-3-8b-instruct:nitro	google/palm-2-chat-bison-32k	meta-llama/llama-3-70b-instruct:nitro	openai/gpt-4o	openai/gpt-4o	google/gemma-7b-it	google/gemma-7b-it	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	openchat/openchat-7b	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	mistralai/mistral-7b-instruct
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain variable ✗	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	TRUE	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓
Biofilm formation	N/A	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	false	false	true	true
Animal pathogenicity	TRUE	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓
Biosafety level	N/A	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 2	biosafety level 1	biosafety level 1	biosafety level 2	biosafety level 2
Health association	N/A	true	false	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	false	false	false	false	true	true
Host association	N/A	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	false	false	true	true	true	true	false	false	false	false	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	beta	beta	beta	N/A	N/A	beta	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓

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