Yersinia thracica

General Information

Yersinia thracica is a relatively newly identified species within the genus Yersinia, which is known for containing several pathogenic species, including Yersinia pestis, the causative agent of plague. What makes Yersinia thracica particularly interesting is its potential role in environmental and clinical settings, although its pathogenicity and ecological niche are still under investigation. One of the unique aspects of Yersinia thracica is its genetic makeup, which shows a combination of traits found in both environmental and pathogenic Yersinia species. This dual characteristic suggests that Yersinia thracica could serve as a model organism for studying the evolution of pathogenicity within the genus. Additionally, Yersinia thracica has been isolated from diverse environments, indicating its adaptability and resilience. This adaptability could provide insights into how bacteria survive and thrive in various conditions, which is valuable for understanding bacterial ecology and developing new antimicrobial strategies. From a research perspective, the study of Yersinia thracica could also contribute to the broader understanding of bacterial genetics, particularly in the context of horizontal gene transfer and the acquisition of virulence factors. Its unique genetic profile makes it a candidate for genomic studies aimed at uncovering the mechanisms behind bacterial evolution and adaptation. In summary, Yersinia thracica stands out due to its potential to bridge the gap between environmental and pathogenic Yersinia species, offering a unique opportunity to explore bacterial evolution, adaptability, and the genetic basis of pathogenicity.

Yersinia thracica is a fascinating bacterium that belongs to the genus Yersinia, which is known for its pathogenic members, including the infamous Yersinia pestis, the causative agent of plague. What makes Y. thracica particularly interesting is its ecological niche and potential role in the environment. This organism has been isolated from soil and water samples, indicating its adaptability to various habitats. Its ability to thrive in diverse environments suggests a level of metabolic versatility that could be valuable for bioremediation efforts. One of the unique aspects of Y. thracica is its genetic makeup, which has been studied to understand the evolutionary relationships within the Yersinia genus. Research into its genome may provide insights into the mechanisms of virulence and resistance that are shared among related species. This could have implications for understanding how pathogenic strains evolve and adapt to their hosts. Additionally, Y. thracica has been noted for its potential in biotechnology applications. The metabolic pathways it employs could be harnessed for the production of bioproducts or for the degradation of environmental pollutants. As researchers continue to explore the capabilities of this organism, it may reveal novel biochemical processes that could be applied in industrial microbiology. In summary, Yersinia thracica stands out not only for its ecological significance but also for its potential contributions to scientific research and environmental applications. Its study could enhance our understanding of microbial diversity and the evolutionary dynamics of pathogenic bacteria.

Taxonomy

Superkingdom: Bacteria

Phylum: Pseudomonadota

Class: Gammaproteobacteria

Order: Enterobacterales

Family: Yersiniaceae

Genus: Yersinia

Species: Yersinia thracica

NCBI ID

2890319

Genome Info

FTP Path:
ftp.ncbi.nlm.nih.gov/genomes/all/GCF/001/123/825/GCF_001123825.1_5139_2_1

File for sequence-based predictions:
GCF_001123825.1_5139_2_1_genomic.fasta

Descriptions

Clinical Implications and Relevance

Source: gpt-4o-mini-2024-07-18

The bacterium Yersinia thracica is a member of the Yersinia genus, which is known for its clinical significance, particularly in relation to infections and disease associations. While less studied than its more notorious relatives, such as Yersinia pestis, the causative agent of plague, Y. thracica has been implicated in cases of gastroenteritis and other gastrointestinal disturbances. Clinical implications of Y. thracica include its potential role as a pathogen in humans, particularly in regions where it is endemic. Pathogenicity is attributed to its ability to survive in the gastrointestinal tract and its capacity to evade the immune response through various mechanisms, including the secretion of virulence factors that inhibit phagocytosis. This ability to evade the host's defenses may contribute to its pathogenic potential, although the full extent of its virulence is still under investigation. In terms of antimicrobial resistance, there is limited data available, but like many enteric pathogens, there is a concern regarding the development of resistance to commonly used antibiotics. This underscores the importance of ongoing surveillance and research to understand the resistance patterns associated with Y. thracica. Currently, there are no known medical applications such as probiotics, vaccines, or therapeutics specifically targeting Y. thracica. However, understanding its role in human health and disease is crucial for developing effective treatment strategies and public health measures, especially in areas where it may be a concern. Overall, while Yersinia thracica may not be as widely recognized as other members of its genus, its potential implications in human health warrant further investigation to clarify its role in infections and to assess its impact on public health.

Habitat and Ecological Niches

Source: gpt-4o-mini-2024-07-18

Yersinia thracica is a bacterium primarily associated with terrestrial ecosystems, particularly in regions with agricultural activities and grassland habitats. This microorganism is often found in the soil and can thrive in environments where organic matter is abundant, such as in decaying plant material and manure. Its presence in these habitats is indicative of its role in nutrient cycling and soil health, as it contributes to the breakdown of organic substances, thereby facilitating the release of nutrients back into the ecosystem. In terms of ecological interactions, Yersinia thracica may engage in symbiotic relationships with various soil-dwelling organisms, including plants and other microorganisms. This can enhance plant growth by improving nutrient availability, particularly in nitrogen-poor soils. Additionally, it may play a role in bioremediation, helping to degrade pollutants in contaminated soils. The adaptability of Yersinia thracica to different soil types and its ability to survive in varying moisture conditions make it a resilient organism within its biome. Its interactions with the surrounding environment underscore its importance in maintaining the ecological balance and promoting soil fertility in its native habitats.

Industrial Application

Source: gpt-4o-mini-2024-07-18

The microorganism Yersinia thracica has shown potential in various industrial applications, particularly in the fields of biotechnology and waste management. This organism is known for its ability to thrive in diverse environments, which can be harnessed for specific processes. In biotechnology, Yersinia thracica can be utilized in fermentation processes to produce valuable metabolites, including organic acids and enzymes that are essential in food and pharmaceutical industries. In the realm of waste management, Yersinia thracica has demonstrated capabilities in biodegradation, where it can break down complex organic materials, thus aiding in the treatment of wastewater and reducing environmental pollutants. This biodegradation process is crucial for the development of sustainable waste treatment solutions. Furthermore, the enzymatic activity of Yersinia thracica can be explored for biofuel production, where it may contribute to the conversion of biomass into biofuels through enzymatic hydrolysis. This process enhances the efficiency of biofuel production, making it a promising area for renewable energy development. Overall, the diverse applications of Yersinia thracica in these industries highlight its significance in advancing sustainable practices and innovative technologies.

Phenotypes and Predictions

The table shows the phenotypes and predictions. Cell colors indicate the class of the value. When literature-based data is available, a checkmark (✓) indicates a correct prediction, while an ✗ indicates an incorrect prediction.

Literature-based phenotypes: 9

LLM predicted phenotypes: 4

Phenotype	High-quality annotation	openai/gpt-3.5-turbo-0125	google/gemini-pro	openai/gpt-4o	openai/gpt-4o	openai/gpt-4	openai/gpt-4	anthropic/claude-3-haiku:beta	mistralai/mixtral-8x7b-instruct:nitro	meta-llama/llama-3-8b-instruct:nitro	meta-llama/llama-3-70b-instruct:nitro	openchat/openchat-7b	microsoft/phi-3-mini-128k-instruct	mistralai/mistral-7b-instruct	google/gemini-pro-1.5	google/gemini-pro-1.5	anthropic/claude-3.5-sonnet	anthropic/claude-3.5-sonnet	google/gemini-flash-1.5	google/gemini-flash-1.5	google/gemma-7b-it	google/gemma-7b-it	google/palm-2-chat-bison-32k	google/palm-2-chat-bison-32k	perplexity/llama-3-sonar-small-32k-chat	perplexity/llama-3-sonar-small-32k-chat	microsoft/wizardlm-2-8x22b	microsoft/wizardlm-2-8x22b
Motility	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Gram staining	gram stain negative	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓	N/A	gram stain negative ✓
Aerophilicity	aerobic	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	facultatively anaerobic ✗	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A
Extreme environment tolerance	TRUE	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗	true ✓	true ✓	false ✗	false ✗	false ✗	false ✗	false ✗	false ✗
Biofilm formation	N/A	true	true	true	true	false	false	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Animal pathogenicity	TRUE	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	false ✗	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓	true ✓
Biosafety level	biosafety level 1	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗	biosafety level 2 ✗
Health association	N/A	false	true	true	true	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Host association	N/A	true	true	true	true	true	true	true	true	true	true	true	false	true	true	true	true	true	true	true	true	true	true	true	true	true	true	true
Plant pathogenicity	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	true ✗	true ✗	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Spore formation	FALSE	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓	false ✓
Hemolysis	N/A	beta	gamma	gamma	gamma	beta	beta	beta	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	N/A	alpha	alpha	N/A	N/A	N/A	N/A	N/A	N/A
Cell shape	bacillus	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	coccus ✗	coccus ✗	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓	bacillus ✓

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